PMC text mining subset in BioC: about three million full-text articles and growing

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

(2018) David Westergaard et al.   PLoS Computational Biology

From word models to executable models of signaling networks using automated assembly

(2017) Benjamin M Gyori et al.   Molecular Systems Biology

SourceData: a semantic platform for curating and searching figures

(2017) Robin Liechti et al.   NATURE METHODS

The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

(2017) Rezarta Islamaj Doğan et al.   Database-The Journal of Biological Databases and Curation

Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task

(2015) Jin-Dong Kim et al.   BMC BIOINFORMATICS

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system

(2015) Catalina O. Tudor et al.   Database-The Journal of Biological Databases and Curation

Section level search functionality in Europe PMC

(2015) Şenay Kafkas et al.   Journal of Biomedical Semantics

BioC implementations in Go, Perl, Python and Ruby

(2014) W. Liu et al.   Database-The Journal of Biological Databases and Curation

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

(2014) D. C. Comeau et al.   Database-The Journal of Biological Databases and Curation

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles

(2014) J. M. Cejuela et al.   Database-The Journal of Biological Databases and Curation

BC4GO: a full-text corpus for the BioCreative IV GO task

(2014) K. Van Auken et al.   Database-The Journal of Biological Databases and Curation

Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

(2013) Sofie Van Landeghem et al.   PLoS One

BioC: a minimalist approach to interoperability for biomedical text processing

(2013) D. C. Comeau et al.   Database-The Journal of Biological Databases and Curation

Concept annotation in the CRAFT corpus

(2012) Michael Bada et al.   BMC BIOINFORMATICS