Data-dependent bucketing improves reference-free compression of sequencing reads

Reference-based compression of short-read sequences using path encoding

(2015) Carl Kingsford et al.   BIOINFORMATICS

Quality score compression improves genotyping accuracy

(2015) Y William Yu et al.   NATURE BIOTECHNOLOGY

Lossy compression of quality scores in genomic data

(2014) Rodrigo Cánovas et al.   BIOINFORMATICS

Fast lossless compression via cascading Bloom filters

(2014) Roye Rozov et al.   BMC BIOINFORMATICS

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

(2014) Rob Patro et al.   NATURE BIOTECHNOLOGY

Data compression for sequencing data

(2013) Sebastian Deorowicz et al.   Algorithms for Molecular Biology

The human genome contracts again

(2013) Dmitri S. Pavlichin et al.   BIOINFORMATICS

QualComp: a new lossy compressor for quality scores based on rate distortion theory

(2013) Idoia Ochoa et al.   BMC BIOINFORMATICS

HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads

(2013) Pinghao Li et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Compression of FASTQ and SAM Format Sequencing Data

(2013) James K. Bonfield et al.   PLoS One

Compression of Structured High-Throughput Sequencing Data

(2013) Fabien Campagne et al.   PLoS One

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform

(2012) A. J. Cox et al.   BIOINFORMATICS

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

NGC: lossless and lossy compression of aligned high-throughput sequencing data

(2012) Niko Popitsch et al.   NUCLEIC ACIDS RESEARCH

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

(2012) Daniel C. Jones et al.   NUCLEIC ACIDS RESEARCH

Robust relative compression of genomes with random access

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Efficient storage of high throughput DNA sequencing data using reference-based compression

(2011) M. Hsi-Yang Fritz et al.   GENOME RESEARCH

Compressing Genomic Sequence Fragments Using SlimGene

(2011) Christos Kozanitis et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A novel compression tool for efficient storage of genome resequencing data

(2011) Congmao Wang et al.   NUCLEIC ACIDS RESEARCH

GReEn: a tool for efficient compression of genome resequencing data

(2011) Armando J. Pinho et al.   NUCLEIC ACIDS RESEARCH

G-SQZ: compact encoding of genomic sequence and quality data

(2010) W. Tembe et al.   BIOINFORMATICS

Data structures and compression algorithms for genomic sequence data

(2009) M. C. Brandon et al.   BIOINFORMATICS

Human genomes as email attachments

(2008) Scott Christley et al.   BIOINFORMATICS