Computational methods for optical mapping

High-coverage sequencing and annotated assemblies of the budgerigar genome

(2014) Ganeshkumar Ganapathy et al.   GigaScience

Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis

(2013) Mohana Ray et al.   BMC GENOMICS

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

(2013) Keith R Bradnam et al.   GigaScience

AGORA: Assembly Guided by Optical Restriction Alignment

(2012) Henry C Lin et al.   BMC BIOINFORMATICS

Statistical Significance of Optical Map Alignments

(2012) Deepayan Sarkar et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

High-resolution human genome structure by single-molecule analysis

(2010) B. Teague et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Single Molecule Scaffold for the Maize Genome

(2009) Shiguo Zhou et al.   PLoS Genetics

Scaffolding and validation of bacterial genome assemblies using optical restriction maps

(2008) N. Nagarajan et al.   BIOINFORMATICS