Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks

Subgraph fluctuations in random graphs

(2012) Christoph Fretter et al.   PHYSICAL REVIEW E

Detecting local network motifs

(2012) Etienne Birmelé   Electronic Journal of Statistics

Mass-balanced randomization of metabolic networks

(2011) Georg Basler et al.   BIOINFORMATICS

Properties of metabolic graphs: biological organization or representation artifacts?

(2011) Wanding Zhou et al.   BMC BIOINFORMATICS

Analog regulation of metabolic demand

(2011) Nikolaus Sonnenschein et al.   BMC Systems Biology

Motifs in co-authorship networks and their relation to the impact of scientific publications

(2011) L. Krumov et al.   EUROPEAN PHYSICAL JOURNAL B

When metabolism meets topology: Reconciling metabolite and reaction networks

(2010) Raul Montañez et al.   BIOESSAYS

Exploring mitochondrial evolution and metabolism organization principles by comparative analysis of metabolic networks

(2010) Xiao Chang et al.   GENOMICS

On the motif distribution in random block-hierarchical networks

(2010) V.A. Avetisov et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Network motifs come in sets: Correlations in the randomization process

(2010) Reid Ginoza et al.   PHYSICAL REVIEW E

Efficient and Exact Sampling of Simple Graphs with Given Arbitrary Degree Sequence

(2010) Charo I. Del Genio et al.   PLoS One

Biological role of noise encoded in a genetic network motif

(2010) M. Kittisopikul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signatures of Arithmetic Simplicity in Metabolic Network Architecture

(2010) William J. Riehl et al.   PLoS Computational Biology

Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli

(2010) Carsten Marr et al.   PLoS Computational Biology

A Sequential Algorithm for Generating Random Graphs

(2009) Mohsen Bayati et al.   ALGORITHMICA

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

On the origin of distribution patterns of motifs in biological networks

(2008) Arun S Konagurthu et al.   BMC Systems Biology

Self-correcting networks: Function, robustness, and motif distributions in biological signal processing

(2008) Pablo Kaluza et al.   CHAOS

A critical view of metabolic network adaptations

(2008) Balázs Papp et al.   HFSP Journal

The incoherent feed-forward loop can generate non-monotonic input functions for genes

(2008) Shai Kaplan et al.   Molecular Systems Biology