QSLiMFinder: improved short linear motif prediction using specific query protein data

Identification of Human Protein Interaction Domains using an ORFeome-based Yeast Two-hybrid Fragment Library

(2013) Selma Waaijers et al.   JOURNAL OF PROTEOME RESEARCH

The eukaryotic linear motif resource ELM: 10 years and counting

(2013) Holger Dinkel et al.   NUCLEIC ACIDS RESEARCH

3did: a catalog of domain-based interactions of known three-dimensional structure

(2013) Roberto Mosca et al.   NUCLEIC ACIDS RESEARCH

Interactions via intrinsically disordered regions: What kind of motifs?

(2012) Rita Pancsa et al.   IUBMB LIFE

SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions

(2012) Norman E. Davey et al.   NUCLEIC ACIDS RESEARCH

Unstructural biology coming of age

(2011) Peter Tompa   CURRENT OPINION IN STRUCTURAL BIOLOGY

Intrinsically disordered proteins: regulation and disease

(2011) M Madan Babu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Interactome-wide prediction of short, disordered protein interaction motifs in humans

(2011) Richard J. Edwards et al.   Molecular BioSystems

Attributes of short linear motifs

(2011) Norman E. Davey et al.   Molecular BioSystems

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.

(2010) Norman E Davey et al.   BMC BIOINFORMATICS

Computational identification and analysis of protein short linear motifs

(2010) Norman et al.   Frontiers in Bioscience-Landmark

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

(2010) N. E. Davey et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Discovery and Characterization of Protein Regulatory Motifs in Eukaryotes

(2010) Daniel S. Lieber et al.   PLoS One

How viruses hijack cell regulation

(2010) Norman E. Davey et al.   TRENDS IN BIOCHEMICAL SCIENCES

Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures

(2010) Amelie Stein et al.   PLoS Computational Biology

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery

(2009) Norman E. Davey et al.   BIOINFORMATICS

Towards inferring time dimensionality in protein–protein interaction networks by integrating structures: the p53 example

(2009) Nurcan Tuncbag et al.   Molecular BioSystems

CompariMotif: quick and easy comparisons of sequence motifs

(2008) R. J. Edwards et al.   BIOINFORMATICS

A careful disorderliness in the proteome: Sites for interaction and targets for future therapies

(2008) Robert B. Russell et al.   FEBS LETTERS

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

(2008) Francesca Diella   Frontiers in Bioscience-Landmark

Contextual Specificity in Peptide-Mediated Protein Interactions

(2008) Amelie Stein et al.   PLoS One