SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.

(2010) Norman E Davey et al.   BMC BIOINFORMATICS

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery

(2009) Norman E. Davey et al.   BIOINFORMATICS

A structure filter for the Eukaryotic Linear Motif Resource

(2009) Allegra Via et al.   BMC BIOINFORMATICS

ELM: the status of the 2010 eukaryotic linear motif resource

(2009) Cathryn M. Gould et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

CompariMotif: quick and easy comparisons of sequence motifs

(2008) R. J. Edwards et al.   BIOINFORMATICS

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

(2008) Claudia Chica et al.   BMC BIOINFORMATICS

Minimotif miner 2nd release: a database and web system for motif search

(2008) S. Rajasekaran et al.   NUCLEIC ACIDS RESEARCH

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

(2008) Martin C. Frith et al.   PLoS Computational Biology