Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival

Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study

(2014) Vincent Gardeux et al.   BMC Medical Genomics

‘N-of-1-pathways’ unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine

(2014) Vincent Gardeux et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

RNA-seq differential expression studies: more sequence or more replication?

(2013) Yuwen Liu et al.   BIOINFORMATICS

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) N. Leng et al.   BIOINFORMATICS

Reconciling clinical importance and statistical significance

(2013) Daniel Shriner et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory

(2012) Haiquan Li et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants

(2012) Kelly Regan et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures

(2010) James Chen et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The Gene Ontology in 2010: extensions and refinements

(2009)   NUCLEIC ACIDS RESEARCH