Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor

Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat

(2015) M. J. Sanderson et al.   AMERICAN JOURNAL OF BOTANY

Phylogeny and photosynthesis of the grass tribe Paniceae

(2015) Jacob D. Washburn et al.   AMERICAN JOURNAL OF BOTANY

The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?

(2015) David Roy Smith   Briefings in Functional Genomics

Epigenetic mechanisms of postzygotic reproductive isolation in plants

(2015) Clément Lafon-Placette et al.   CURRENT OPINION IN PLANT BIOLOGY

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid species Mimulus peregrinus

(2015) Mario Vallejo-Marín et al.   EVOLUTION

Hybridization and reproductive isolation between diploid Erythronium mesochoreum and its tetraploid congener E. albidum (Liliaceae)

(2015) Kathy Roccaforte et al.   EVOLUTION

Bidirectional but asymmetrical sexual hybridization between Brassica carinata and Sinapis arvensis (Brassicaceae)

(2015) Kyle W. Cheung et al.   JOURNAL OF PLANT RESEARCH

Genomic studies on the nature of species: adaptation and speciation inMimulus

(2015) Alex D. Twyford et al.   MOLECULAR ECOLOGY

On the relative abundance of autopolyploids and allopolyploids

(2015) Michael S. Barker et al.   NEW PHYTOLOGIST

Interploid crosses in heather (Calluna vulgaris)

(2015) A. Behrend et al.   SCIENTIA HORTICULTURAE

Interspecific hybridisation within Buxus spp.

(2015) Katrijn Van Laere et al.   SCIENTIA HORTICULTURAE

Genome skimming for next-generation biodiversity analysis

(2015) Steven Dodsworth   TRENDS IN PLANT SCIENCE

Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome

(2015) Alison Gonçalves Nazareno et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Interploid and intraploid hybridizations to produce polyploid Haskap (Lonicera caerulea var. emphyllocalyx) plants

(2014) Tomomi Miyashita et al.   EUPHYTICA

Genomics of invasion: diversity and selection in introduced populations of monkeyflowers (Mimulus guttatus)

(2014) Joshua Puzey et al.   MOLECULAR ECOLOGY

Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayroseet al. (2011)

(2014) Douglas E. Soltis et al.   NEW PHYTOLOGIST

Cytotype coexistence leads to triploid hybrid production in a diploid-tetraploid contact zone of Chamerion angustifolium (Onagraceae)

(2013) H. A. Sabara et al.   AMERICAN JOURNAL OF BOTANY

Genetic Dissection of a Major Anthocyanin QTL Contributing to Pollinator-Mediated Reproductive Isolation Between Sister Species ofMimulus

(2013) Yao-Wu Yuan et al.   GENETICS

Architecture and evolution of a minute plant genome

(2013) Enrique Ibarra-Laclette et al.   NATURE

Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke

(2013) Dan G. Bock et al.   NEW PHYTOLOGIST

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Dissection of two major components of the post-zygotic hybridization barrier in rice endosperm

(2013) Daisuke Sekine et al.   PLANT JOURNAL

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

Insights from the Complete Chloroplast Genome into the Evolution of Sesamum indicum L

(2013) Haiyang Zhang et al.   PLoS One

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

(2013) U. Hellsten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

(2012) P. Roxanne Steele et al.   AMERICAN JOURNAL OF BOTANY

Polyploidy in Indian paintbrush (Castilleja ; Orobanchaceae) species shapes but does not prevent gene flow across species boundaries

(2012) Erika I. Hersch-Green   AMERICAN JOURNAL OF BOTANY

The role of inter-ploidy block for reproductive isolation of the diploid Leucanthemum pluriflorum Pau (Compositae, Anthemideae) and its tetra- and hexaploid relatives

(2012) Roland Greiner et al.   FLORA

Evidence against Equimolarity of Large Repeat Arrangements and a Predominant Master Circle Structure of the Mitochondrial Genome from a Monkeyflower (Mimulus guttatus) Lineage with Cryptic CMS

(2012) Jeffrey P. Mower et al.   Genome Biology and Evolution

Hybridisation and genetic diversity in introduced Mimulus (Phrymaceae)

(2012) M Vallejo-Marin et al.   HEREDITY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Tearing down barriers: understanding the molecular mechanisms of interploidy hybridizations

(2012) N. Schatlowski et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Mimulus peregrinus (Phrymaceae): A new British allopolyploid species

(2012) Mario Vallejo-Marin   PhytoKeys

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Epigenetic mechanisms in the endosperm and their consequences for the evolution of flowering plants

(2011) Claudia Köhler et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Next-generation hybridization and introgression

(2011) A D Twyford et al.   HEREDITY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Breeding barriers at a diploid–hexaploid contact zone in Aster amellus

(2010) Sílvia Castro et al.   EVOLUTIONARY ECOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Patterns of hybridization and asymmetrical gene flow in hybrid zones of the rare Eucalyptus aggregata and common E. rubida

(2010) D L Field et al.   HEREDITY

The impact of the triploid block on the origin and evolution of polyploid plants

(2010) Claudia Köhler et al.   TRENDS IN GENETICS

Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR

(2009) Clare E. Holleley et al.   BIOTECHNIQUES

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Genetic divergence causes parallel evolution of flower color in ChileanMimulus

(2009) Arielle M. Cooley et al.   NEW PHYTOLOGIST

Introgression of fitness genes across a ploidy barrier

(2009) Mark A. Chapman et al.   NEW PHYTOLOGIST

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL