Transcriptional and metabolic data integration and modeling for identification of active pathways

Merging transcriptomics and metabolomics - advances in breast cancer profiling

(2010) Eldrid Borgan et al.   BMC CANCER

Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis

(2010) Elizabeth Allen et al.   BMC Systems Biology

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Simultaneous Model Selection via Rate-Distortion Theory, With Applications to Cluster and Significance Analysis of Gene Expression Data

(2009) Rebecka Jörnsten   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

The prostate-cancer metabolome

(2009) Cory Abate-Shen et al.   NATURE

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

(2009) Arun Sreekumar et al.   NATURE

The cancer genome

(2009) Michael R. Stratton et al.   NATURE

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae

(2009) Patrick H. Bradley et al.   PLoS Computational Biology

Integrated Pathway Analysis of Rat Urine Metabolic Profiles and Kidney Transcriptomic Profiles To Elucidate the Systems Toxicology of Model Nephrotoxicants

(2008) Ethan Yixun Xu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen

(2008) Max Bylesjö et al.   JOURNAL OF PROTEOME RESEARCH