Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation
Authors
Keywords
Bisulfite sequencing, Rat, DNA methylation
Journal
AGE
Volume 38, Issue 3, Pages -
Publisher
Springer Nature
Online
2016-04-18
DOI
10.1007/s11357-016-9914-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genome-Wide DNA Methylation Profiling Reveals Epigenetic Changes in the Rat Nucleus Accumbens Associated With Cross-Generational Effects of Adolescent THC Exposure
- (2015) Corey T Watson et al. NEUROPSYCHOPHARMACOLOGY
- Post-conversion targeted capture of modified cytosines in mammalian and plant genomes
- (2015) Qing Li et al. NUCLEIC ACIDS RESEARCH
- Reading the unique DNA methylation landscape of the brain: Non-CpG methylation, hydroxymethylation, and MeCP2
- (2015) Benyam Kinde et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tet3 mediates stable glucocorticoid-induced alterations in DNA methylation and Dnmt3a/Dkk1 expression in neural progenitors
- (2015) R Bose et al. Cell Death & Disease
- 2015 Guidelines for Establishing Genetically Modified Rat Models for Cardiovascular Research
- (2015) Michael J. Flister et al. Journal of Cardiovascular Translational Research
- Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants
- (2015) Fiona Allum et al. Nature Communications
- Targeted DNA Methylation Analysis by Next-generation Sequencing
- (2015) Dustin R. Masser et al. Jove-Journal of Visualized Experiments
- Performance comparison of four exome capture systems for deep sequencing
- (2014) Chandra Sekhar Chilamakuri et al. BMC GENOMICS
- Accurate mitochondrial DNA sequencing using off-target reads provides a single test to identify pathogenic point mutations
- (2014) Helen R. Griffin et al. GENETICS IN MEDICINE
- Methylation levels of the SCD1 gene promoter and LINE-1 repeat region are associated with weight change: An intervention study
- (2014) Gracia María Martín-Núñez et al. MOLECULAR NUTRITION & FOOD RESEARCH
- Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
- (2014) Michael J Ziller et al. NATURE METHODS
- The UCSC Genome Browser database: 2015 update
- (2014) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Methylation and Gene Expression Changes in Newborn Rats following Maternal Protein Restriction and Reversal by Folic Acid
- (2014) Gioia Altobelli et al. PLoS One
- NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets
- (2013) Marcus R. Breese et al. BIOINFORMATICS
- The Control Region of Mitochondrial DNA Shows an Unusual CpG and Non-CpG Methylation Pattern
- (2013) D. Bellizzi et al. DNA RESEARCH
- Regionally Specific and Genome-Wide Analyses Conclusively Demonstrate the Absence of CpG Methylation in Human Mitochondrial DNA
- (2013) E. E. Hong et al. MOLECULAR AND CELLULAR BIOLOGY
- In-solution hybrid capture of bisulfite-converted DNA for targeted bisulfite sequencing of 174 ADME genes
- (2013) Maxim Ivanov et al. NUCLEIC ACIDS RESEARCH
- RefSeq: an update on mammalian reference sequences
- (2013) Kim D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- Finding the lost treasures in exome sequencing data
- (2013) David C. Samuels et al. TRENDS IN GENETICS
- Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing
- (2013) Dustin R Masser et al. Epigenetics & Chromatin
- Diametrically opposite methylome-transcriptome relationships in high- and low-CpG promoter genes in postmitotic neural rat tissue
- (2012) Theresa Hartung et al. Epigenetics
- DNA methylome analysis using short bisulfite sequencing data
- (2012) Felix Krueger et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Functions of DNA methylation: islands, start sites, gene bodies and beyond
- (2012) Peter A. Jones NATURE REVIEWS GENETICS
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
- (2012) Kasper D Hansen et al. GENOME BIOLOGY
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- Promoter methylation and age-related downregulation of Klotho in rhesus monkey
- (2011) Gwendalyn D. King et al. AGE
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome
- (2011) Juan Sandoval et al. Epigenetics
- Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
- (2011) Hongcang Gu et al. Nature Protocols
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Principles and challenges of genome-wide DNA methylation analysis
- (2010) Peter W. Laird NATURE REVIEWS GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Rats!
- (2009) P. M. Iannaccone et al. Disease Models & Mechanisms
- The completion of the Mammalian Gene Collection (MGC)
- (2009) et al. GENOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
- (2009) Rafael A Irizarry et al. NATURE GENETICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now