Transcriptome reprogramming, epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma harzianum

Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants

(2017) Xudong Shang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Bound by Fate: The Role of Reactive Oxygen Species in Receptor-Like Kinase Signaling

(2017) Sachie Kimura et al.   PLANT CELL

Plant response to biotic stress: Is there a common epigenetic response during plant-pathogenic and symbiotic interactions?

(2017) Prince Zogli et al.   PLANT SCIENCE

Synergistic Action of a Microbial-based Biostimulant and a Plant Derived-Protein Hydrolysate Enhances Lettuce Tolerance to Alkalinity and Salinity

(2017) Youssef Rouphael et al.   Frontiers in Plant Science

Alleviation of the effects of saline-alkaline stress on maize seedlings by regulation of active oxygen metabolism by Trichoderma asperellum

(2017) Jian Fu et al.   PLoS One

Suppression Subtractive Hybridization analysis provides new insights into the tomato (Solanum lycopersicum L.) response to the plant probiotic microorganism Trichoderma longibrachiatum MK1

(2016) Monica De Palma et al.   JOURNAL OF PLANT PHYSIOLOGY

Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita

(2016) Ainhoa Martínez-Medina et al.   NEW PHYTOLOGIST

Priming for Enhanced Defense

(2015) Uwe Conrath et al.   Annual Review of Phytopathology

Multiple Roles and Effects of a Novel Trichoderma Hydrophobin

(2015) Michelina Ruocco et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Trichoderma as biostimulant: exploiting the multilevel properties of a plant beneficial fungus

(2015) José López-Bucio et al.   SCIENTIA HORTICULTURAE

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Alternative Splicing in Plant Immunity

(2014) Shengming Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The toolbox ofTrichodermaspp. in the biocontrol ofBotrytis cinereadisease

(2014) Christine M. F. Vos et al.   MOLECULAR PLANT PATHOLOGY

Salicylic acid preventsTrichoderma harzianumfrom entering the vascular system of roots

(2014) Ana Alonso-Ramírez et al.   MOLECULAR PLANT PATHOLOGY

AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis

(2014) Daniel J. Gibbs et al.   NEW PHYTOLOGIST

N-Acyl-Homoserine Lactone Primes Plants for Cell Wall Reinforcement and Induces Resistance to Bacterial Pathogens via the Salicylic Acid/Oxylipin Pathway

(2014) S. T. Schenk et al.   PLANT CELL

Gate crashing arbuscular mycorrhizas:in vivoimaging shows the extensive colonization of both symbionts byTrichoderma atroviride

(2014) Beatrice Lace et al.   Environmental Microbiology Reports

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology

(2013) Živa Ramšak et al.   NUCLEIC ACIDS RESEARCH

High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants

(2013) Brian E. Howard et al.   PLoS One

Inside Arbuscular Mycorrhizal Roots – Molecular Probes to Understand the Symbiosis

(2013) Daniel Ruzicka et al.   Plant Genome

Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance

(2013) Yariv Brotman et al.   PLoS Pathogens

Epigenetic responses to stress: triple defense?

(2012) Ruben Gutzat et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcriptomic response of Arabidopsis thaliana after 24h incubation with the biocontrol fungus Trichoderma harzianum

(2012) Eugenia Morán-Diez et al.   JOURNAL OF PLANT PHYSIOLOGY

Trichoderma harzianum Enhances Antioxidant Defense of Tomato Seedlings and Resistance to Water Deficit

(2012) Fatemeh Mastouri et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data

(2012) Vinay K. Mittal et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Characterization of ISR Induced in Arabidopsis thaliana by Trichoderma hamatum T382 Against Botrytis cinerea Infection

(2012) Janick Mathys et al.   Frontiers in Plant Science

Respiratory burst oxidases: the engines of ROS signaling

(2011) Nobuhiro Suzuki et al.   CURRENT OPINION IN PLANT BIOLOGY

Colonization of Arabidopsis roots by Trichoderma atroviride promotes growth and enhances systemic disease resistance through jasmonic acid/ethylene and salicylic acid pathways

(2011) Miguel Angel Salas-Marina et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Plant-beneficial effects of Trichoderma and of its genes

(2011) R. Hermosa et al.   MICROBIOLOGY-SGM

Potato cytosine methylation and gene expression changes induced by a beneficial bacterial endophyte, Burkholderia phytofirmans strain PsJN

(2011) Kedong Da et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Induced Systemic Resistance and Plant Responses to Fungal Biocontrol Agents

(2010) Michal Shoresh et al.   Annual Review of Phytopathology

The beneficial effect of Trichoderma spp. on tomato is modulated by the plant genotype

(2010) MARINA TUCCI et al.   MOLECULAR PLANT PATHOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification of potential marker genes for Trichoderma harzianum strains with high antagonistic potential against Rhizoctonia solani by a rapid subtraction hybridization approach

(2009) Barbara Scherm et al.   CURRENT GENETICS

Trichoderma virens, a Plant Beneficial Fungus, Enhances Biomass Production and Promotes Lateral Root Growth through an Auxin-Dependent Mechanism in Arabidopsis

(2009) H. A. Contreras-Cornejo et al.   PLANT PHYSIOLOGY

Modulation of defense signal transduction by flagellin-induced WRKY41 transcription factor in Arabidopsis thaliana

(2008) Kuniaki Higashi et al.   MOLECULAR GENETICS AND GENOMICS

MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe

(2008) G. Segarra et al.   PLANT BIOLOGY

MYB72 Is Required in Early Signaling Steps of Rhizobacteria-Induced Systemic Resistance in Arabidopsis

(2008) S. Van der Ent et al.   PLANT PHYSIOLOGY

The Molecular Basis of Shoot Responses of Maize Seedlings to Trichoderma harzianum T22 Inoculation of the Root: A Proteomic Approach

(2008) M. Shoresh et al.   PLANT PHYSIOLOGY

Trichoderma–plant–pathogen interactions

(2007) Francesco Vinale et al.   SOIL BIOLOGY & BIOCHEMISTRY