Classifying Included and Excluded Exons in Exon Skipping Event Using Histone Modifications

Prediction of potential disease-associated microRNAs using structural perturbation method

(2018) Xiangxiang Zeng et al.   BIOINFORMATICS

O-GlcNAcPRED-II: an integrated classification algorithm for identifying O-GlcNAcylation sites based on fuzzy undersampling and a K-means PCA oversampling technique

(2018) Cangzhi Jia et al.   BIOINFORMATICS

Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest

(2018) Xin Wang et al.   BMC GENOMICS

iDNA6mA-PseKNC: Identifying DNA N 6 -methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC

(2018) Pengmian Feng et al.   GENOMICS

Classifying dynamic transitions in high dimensional neural mass models: A random forest approach

(2018) Lauric A. Ferrat et al.   PLoS Computational Biology

AIPpred: Sequence-Based Prediction of Anti-inflammatory Peptides Using Random Forest

(2018) Balachandran Manavalan et al.   Frontiers in Pharmacology

Identifying sigma70 promoters with novel pseudo nucleotide composition

(2017) Hao Lin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Deep learning of the splicing (epi)genetic code reveals a novel candidate mechanism linking histone modifications to ESC fate decision

(2017) Yungang Xu et al.   NUCLEIC ACIDS RESEARCH

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

Predicting cancerlectins by the optimal g-gap dipeptides

(2015) Hao Lin et al.   Scientific Reports

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

Computational analysis of associations between alternative splicing and histone modifications

(2013) Yuki Shindo et al.   FEBS LETTERS

Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms

(2013) H.-L. Zhou et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

(2012) H. Tilgner et al.   GENOME RESEARCH

Combinations of Histone Modifications Mark Exon Inclusion Levels

(2012) Stefan Enroth et al.   PLoS One

Chromatin: The Final Frontier in Splicing Regulation?

(2010) Kristi Fox-Walsh et al.   DEVELOPMENTAL CELL

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

(2010) Hao Lin et al.   JOURNAL OF THEORETICAL BIOLOGY

Deciphering the splicing code

(2010) Yoseph Barash et al.   NATURE

Regulation of Alternative Splicing by Histone Modifications

(2010) R. F. Luco et al.   SCIENCE

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Combinatorial patterns of histone acetylations and methylations in the human genome

(2008) Zhibin Wang et al.   NATURE GENETICS

Splicing regulation: From a parts list of regulatory elements to an integrated splicing code

(2008) Z. Wang et al.   RNA