First steps towards mitochondrial pan-genomics: detailed analysis of Fusarium graminearum mitogenomes

Characterization of the Two-Speed Subgenomes of Fusarium graminearum Reveals the Fast-Speed Subgenome Specialized for Adaption and Infection

(2017) Qinhu Wang et al.   Frontiers in Plant Science

Computational pan-genomics: status, promises and challenges

(2016)   BRIEFINGS IN BIOINFORMATICS

GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research

(2016) Balázs Brankovics et al.   PLoS Computational Biology

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

(2015) Robert King et al.   BMC GENOMICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Relocation of genes generates non-conserved chromosomal segments in Fusarium graminearum that show distinct and co-regulated gene expression patterns

(2014) Chunzhao Zhao et al.   BMC GENOMICS

The complete mitogenome ofFusarium gerlachii

(2014) Tomasz Kulik et al.   Mitochondrial DNA

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Evidence for inter-specific recombination among the mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex

(2013) Gerda Fourie et al.   BMC GENOMICS

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

(2013) Sergey Nurk et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

SNP calling by sequencing pooled samples

(2012) Emanuele Raineri et al.   BMC BIOINFORMATICS

Genome Sequence of Hydrogenophaga sp. Strain PBC, a 4-Aminobenzenesulfonate-Degrading Bacterium

(2012) H. M. Gan et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Population Analysis of the Fusarium graminearum Species Complex from Wheat in China Show a Shift to More Aggressive Isolates

(2012) Hao Zhang et al.   PLoS One

Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame

(2011) Rasha M. Al-Reedy et al.   FUNGAL GENETICS AND BIOLOGY

Mitochondrial inheritance in fungi

(2010) Christoph W Basse   CURRENT OPINION IN MICROBIOLOGY

Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples

(2010) A. M. Smith et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support

(2009) Yu Liu et al.   BMC EVOLUTIONARY BIOLOGY

Multiple copies of cytochrome oxidase 1 in species of the fungal genusFusarium

(2009) SCOTT R. GILMORE et al.   Molecular Ecology Resources

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

(2008) H. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America

(2007) Todd J. Ward et al.   FUNGAL GENETICS AND BIOLOGY