Assessment of genomic changes in a CRISPR/Cas9 Phaeodactylum tricornutum mutant through whole genome resequencing
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Title
Assessment of genomic changes in a CRISPR/Cas9 Phaeodactylum tricornutum mutant through whole genome resequencing
Authors
Keywords
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Journal
PeerJ
Volume 6, Issue -, Pages e5507
Publisher
PeerJ
Online
2018-10-05
DOI
10.7717/peerj.5507
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Note: Only part of the references are listed.- An Expanded Plasmid-Based Genetic Toolbox Enables Cas9 Genome Editing and Stable Maintenance of Synthetic Pathways in Phaeodactylum tricornutum
- (2018) Samuel S. Slattery et al. ACS Synthetic Biology
- Optimizing CRISPR/Cas9 for the Diatom Phaeodactylum tricornutum
- (2018) Daniel Stukenberg et al. Frontiers in Plant Science
- CRISPR-Cas orthologues and variants: optimizing the repertoire, specificity and delivery of genome engineering tools
- (2017) Alberto Cebrian-Serrano et al. MAMMALIAN GENOME
- Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
- (2017) Thomas Mock et al. NATURE
- Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom
- (2017) Swaraj Basu et al. NEW PHYTOLOGIST
- CRISPR/Cas9 targeting events cause complex deletions and insertions at 17 sites in the mouse genome
- (2017) Ha Youn Shin et al. Nature Communications
- Characterization of the interplay between DNA repair and CRISPR/Cas9-induced DNA lesions at an endogenous locus
- (2017) Anne Bothmer et al. Nature Communications
- Heritable Genomic Fragment Deletions and Small Indels in the Putative ENGase Gene Induced by CRISPR/Cas9 in Barley
- (2017) Eszter Kapusi et al. Frontiers in Plant Science
- CRISPR-Cas9 cleavage efficiency correlates strongly with target-sgRNA folding stability: from physical mechanism to off-target assessment
- (2017) Xiaojun Xu et al. Scientific Reports
- Nuclease Target Site Selection for Maximizing On-target Activity and Minimizing Off-target Effects in Genome Editing
- (2016) Ciaran M Lee et al. MOLECULAR THERAPY
- Precision Targeted Mutagenesis via Cas9 Paired Nickases in Rice
- (2016) Masafumi Mikami et al. PLANT AND CELL PHYSIOLOGY
- Patterns of CRISPR/Cas9 activity in plants, animals and microbes
- (2016) Luisa Bortesi et al. PLANT BIOTECHNOLOGY JOURNAL
- Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana
- (2016) Amanda Hopes et al. Plant Methods
- A CRISPR/Cas9 system adapted for gene editing in marine algae
- (2016) Marianne Nymark et al. Scientific Reports
- Efficient Generation of Myostatin Gene Mutated Rabbit by CRISPR/Cas9
- (2016) Qingyan Lv et al. Scientific Reports
- Sequence features associated with the cleavage efficiency of CRISPR/Cas9 system
- (2016) Xiaoxi Liu et al. Scientific Reports
- Systematic quantification of HDR and NHEJ reveals effects of locus, nuclease, and cell type on genome-editing
- (2016) Yuichiro Miyaoka et al. Scientific Reports
- Targeted mutagenesis in chicken using CRISPR/Cas9 system
- (2016) Isao Oishi et al. Scientific Reports
- Systematic analysis of CRISPR–Cas9 mismatch tolerance reveals low levels of off-target activity
- (2015) Emily M. Anderson et al. JOURNAL OF BIOTECHNOLOGY
- The upstream regulatory sequence of the light harvesting complex Lhcf2 gene of the marine diatom Phaeodactylum tricornutum enhances transcription in an orientation- and distance-independent fashion
- (2015) Monia Teresa Russo et al. Marine Genomics
- Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells
- (2015) Daesik Kim et al. NATURE METHODS
- Oil Accumulation by the Oleaginous DiatomFistulifera solarisas Revealed by the Genome and Transcriptome
- (2015) Tsuyoshi Tanaka et al. PLANT CELL
- Comparison of CRISPR/Cas9 expression constructs for efficient targeted mutagenesis in rice
- (2015) Masafumi Mikami et al. PLANT MOLECULAR BIOLOGY
- Genomic perspectives on the birth and spread of plastids: Fig. 1.
- (2015) John M. Archibald PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Designer diatom episomes delivered by bacterial conjugation
- (2015) Bogumil J. Karas et al. Nature Communications
- Generation of inheritable and “transgene clean” targeted genome-modified rice in later generations using the CRISPR/Cas9 system
- (2015) Rong-Fang Xu et al. Scientific Reports
- Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
- (2014) S. Bae et al. BIOINFORMATICS
- Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
- (2014) Hiroshi Nishimasu et al. CELL
- Development and Applications of CRISPR-Cas9 for Genome Engineering
- (2014) Patrick D. Hsu et al. CELL
- Low Incidence of Off-Target Mutations in Individual CRISPR-Cas9 and TALEN Targeted Human Stem Cell Clones Detected by Whole-Genome Sequencing
- (2014) Adrian Veres et al. Cell Stem Cell
- Whole-Genome Sequencing Analysis Reveals High Specificity of CRISPR/Cas9 and TALEN-Based Genome Editing in Human iPSCs
- (2014) Cory Smith et al. Cell Stem Cell
- Successful Transient Expression of Cas9 and Single Guide RNA Genes in Chlamydomonas reinhardtii
- (2014) Wenzhi Jiang et al. EUKARYOTIC CELL
- CRISPR/Cas9 for genome editing: progress, implications and challenges
- (2014) F. Zhang et al. HUMAN MOLECULAR GENETICS
- The CRISPR–Cas system for plant genome editing: advances and opportunities
- (2014) Vinay Kumar et al. JOURNAL OF EXPERIMENTAL BOTANY
- CRISPR-Cas systems for editing, regulating and targeting genomes
- (2014) Jeffry D Sander et al. NATURE BIOTECHNOLOGY
- Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system
- (2014) Mehdi Ghorbal et al. NATURE BIOTECHNOLOGY
- GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
- (2014) Shengdar Q Tsai et al. NATURE BIOTECHNOLOGY
- Classification and evolution of type II CRISPR-Cas systems
- (2014) Krzysztof Chylinski et al. NUCLEIC ACIDS RESEARCH
- Genome Editing with Engineered Nucleases in Plants
- (2014) Y. Osakabe et al. PLANT AND CELL PHYSIOLOGY
- A New and Improved Host-Independent Plasmid System for RK2-Based Conjugal Transfer
- (2014) Trine Aakvik Strand et al. PLoS One
- The new frontier of genome engineering with CRISPR-Cas9
- (2014) J. A. Doudna et al. SCIENCE
- Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology
- (2014) Fayza Daboussi et al. Nature Communications
- Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish
- (2013) A. Hruscha et al. DEVELOPMENT
- An Inordinate Fondness? The Number, Distributions, and Origins of Diatom Species
- (2013) David G. Mann et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
- (2013) Prashant Mali et al. NATURE BIOTECHNOLOGY
- DNA targeting specificity of RNA-guided Cas9 nucleases
- (2013) Patrick D Hsu et al. NATURE BIOTECHNOLOGY
- High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity
- (2013) Vikram Pattanayak et al. NATURE BIOTECHNOLOGY
- High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
- (2013) Yanfang Fu et al. NATURE BIOTECHNOLOGY
- Targeted genome modification technologies and their applications in crop improvements
- (2013) Kunling Chen et al. PLANT CELL REPORTS
- RNA-Guided Genome Editing for Target Gene Mutations in Wheat
- (2013) Santosh Kumar Upadhyay et al. G3-Genes Genomes Genetics
- Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation
- (2012) Markus Lommer et al. GENOME BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The life of diatoms in the world's oceans
- (2009) E. Virginia Armbrust NATURE
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- Gene silencing in the marine diatom Phaeodactylum tricornutum
- (2009) Valentina De Riso et al. NUCLEIC ACIDS RESEARCH
- Diatoms in biotechnology: modern tools and applications
- (2008) Andrew Bozarth et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- The Phaeodactylum genome reveals the evolutionary history of diatom genomes
- (2008) Chris Bowler et al. NATURE
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