A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology

Persistence of Resident and Transplanted Genotypes of the Undomesticated Yeast Saccharomyces paradoxus in Forest Soil

(2018) James B. Anderson et al.   mSphere

Extraction of genomic DNA from yeasts for PCR-based applications

(2018) Marko Lõoke et al.   BIOTECHNIQUES

The Rapid Evolution of an Ohnolog Contributes to the Ecological Specialization of Incipient Yeast Species

(2017) Chris Eberlein et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deciphering the Genic Basis of Yeast Fitness Variation by Simultaneous Forward and Reverse Genetics

(2017) Calum J. Maclean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial Recombination and Introgression during Speciation by Hybridization

(2017) Jean-Baptiste Leducq et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeastSaccharomyces paradoxusin a natural woodland

(2017) Wenjing Xia et al.   MOLECULAR ECOLOGY

Evolutionary biology through the lens of budding yeast comparative genomics

(2017) Souhir Marsit et al.   NATURE REVIEWS GENETICS

Asymmetric competition impacts evolutionary rescue in a changing environment

(2017) Courtney L. Van Den Elzen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Identification of the fitness determinants of budding yeast on a natural substrate

(2016) Marie Filteau et al.   ISME Journal

Measuring microbial fitness in a field reciprocal transplant experiment

(2016) Primrose J. Boynton et al.   Molecular Ecology Resources

Molecular and cellular bases of adaptation to a changing environment in microorganisms

(2016) Clara Bleuven et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Barcode Sequencing Screen Identifies SUB1 as a Regulator of Yeast Pheromone Inducible Genes

(2016) Anna Sliva et al.   G3-Genes Genomes Genetics

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

(2016) Jean-Baptiste Leducq et al.   Nature Microbiology

Adaptation in Natural Microbial Populations

(2015) Britt Koskella et al.   Annual Review of Ecology Evolution and Systematics

The interaction ofSaccharomyces paradoxuswith its natural competitors on oak bark

(2015) Vienna Kowallik et al.   MOLECULAR ECOLOGY

Metabolic variation in natural populations of wild yeast

(2015) Pedram Samani et al.   Ecology and Evolution

Genes Required for Survival in Microgravity Revealed by Genome-Wide Yeast Deletion Collections Cultured during Spaceflight

(2015) Corey Nislow et al.   Biomed Research International

The Yeast Deletion Collection: A Decade of Functional Genomics

(2014) Guri Giaever et al.   GENETICS

Chromosomal variation segregates within incipient species and correlates with reproductive isolation

(2014) Guillaume Charron et al.   MOLECULAR ECOLOGY

Local climatic adaptation in a widespread microorganism

(2014) J.-B. Leducq et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection

(2014) Benjamin VanderSluis et al.   GENOME BIOLOGY

Exploring the northern limit of the distribution ofSaccharomyces cerevisiaeandSaccharomyces paradoxusin North America

(2013) Guillaume Charron et al.   FEMS YEAST RESEARCH

Resource Availability and Competition Shape the Evolution of Survival and Growth Ability in a Bacterial Community

(2013) Minna Pekkonen et al.   PLoS One

Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation

(2013) Maite Novo et al.   PLoS One

A Systematic Approach for the Genetic Dissection of Protein Complexes in Living Cells

(2013) Guillaume Diss et al.   Cell Reports

Design and Analysis of Bar-seq Experiments

(2013) David G. Robinson et al.   G3-Genes Genomes Genetics

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Generation and analysis of a barcode-tagged insertion mutant library in the fission yeast Schizosaccharomyces pombe

(2012) Bo-Ruei Chen et al.   BMC GENOMICS

Mating-Type Genes and MAT Switching in Saccharomyces cerevisiae

(2012) J. E. Haber   GENETICS

How competition affects evolutionary rescue

(2012) M. M. Osmond et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

(2012) Brant C. Faircloth et al.   PLoS One

The Genomic Landscape and Evolutionary Resolution of Antagonistic Pleiotropy in Yeast

(2012) Wenfeng Qian et al.   Cell Reports

Species Interactions Alter Evolutionary Responses to a Novel Environment

(2012) Diane Lawrence et al.   PLOS BIOLOGY

System-Level Analysis of Genes and Functions Affecting Survival During Nutrient Starvation in Saccharomyces cerevisiae

(2010) D. Gresham et al.   GENETICS

Generation of a large set of genetically tractable haploid and diploidSaccharomyces strains

(2009) Francisco A. Cubillos et al.   FEMS YEAST RESEARCH

Quantitative phenotyping via deep barcode sequencing

(2009) A. M. Smith et al.   GENOME RESEARCH

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Saccharomyces sensu stricto as a model system for evolution and ecology

(2008) T REPLANSKY et al.   TRENDS IN ECOLOGY & EVOLUTION