Impact of high-grain diet feeding on mucosa-associated bacterial community and gene expression of tight junction proteins in the small intestine of goats

The Development of Microbiota and Metabolome in Small Intestine of Sika Deer (Cervus nippon) from Birth to Weaning

(2018) Zhipeng Li et al.   Frontiers in Microbiology

Composition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences

(2017) Jennifer Kelly et al.   ENVIRONMENTAL MICROBIOLOGY

Epimural bacterial community structure in the rumen of Holstein cows with different responses to a long-term subacute ruminal acidosis diet challenge

(2017) S.U. Wetzels et al.   JOURNAL OF DAIRY SCIENCE

Feeding a High Concentration Diet Induces Unhealthy Alterations in the Composition and Metabolism of Ruminal Microbiota and Host Response in a Goat Model

(2017) Canfeng Hua et al.   Frontiers in Microbiology

Composition of Ileal Bacterial Community in Grazing Goats Varies across Non-rumination, Transition and Rumination Stages of Life

(2016) Jinzhen Jiao et al.   Frontiers in Microbiology

Grain-rich diets altered the colonic fermentation and mucosa-associated bacterial communities and induced mucosal injuries in goats

(2016) Huimin Ye et al.   Scientific Reports

Taxonomic Identification of Ruminal Epithelial Bacterial Diversity during Rumen Development in Goats

(2015) Jinzhen Jiao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationships between diets different in fibre type and content with growth, Escherichia coli shedding, and faecal microbial diversity after weaning

(2015) S. N. Jenkins et al.   Animal Production Science

Starch digestion in the rumen, small intestine, and hind gut of dairy cows – A meta-analysis

(2014) A. Moharrery et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-grain feeding alters caecal bacterial microbiota composition and fermentation and results in caecal mucosal injury in goats

(2014) Junhua Liu et al.   BRITISH JOURNAL OF NUTRITION

Amylase addition increases starch ruminal digestion in first-lactation cows fed high and low starch diets

(2014) P. Nozière et al.   JOURNAL OF DAIRY SCIENCE

Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats

(2013) Barbara U. Metzler-Zebeli et al.   ANAEROBE

Use of Pyrosequencing to Characterize the Microbiota in the Ileum of Goats Fed with Increasing Proportion of Dietary Grain

(2013) Shengyong Mao et al.   CURRENT MICROBIOLOGY

Subacute ruminal acidosis (SARA), endotoxins and health consequences

(2012) J.C. Plaizier et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis

(2011) Eran Elinav et al.   CELL

Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens

(2011) Nilusha Malmuthuge et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows

(2011) S. Li et al.   JOURNAL OF DAIRY SCIENCE

Regulation of Tight Junction Permeability by Intestinal Bacteria and Dietary Components

(2011) Dulantha Ulluwishewa et al.   JOURNAL OF NUTRITION

Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype

(2011) P. Rausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

PCR-DGGE analysis of bacterial population attached to the bovine rumen wall

(2010) F. Lukáš et al.   FOLIA MICROBIOLOGICA

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Commensals, Bacterial Pathogens and Intestinal Inflammation: An Intriguing Ménage à Trois

(2008) Thierry Pédron et al.   Cell Host & Microbe

Subacute ruminal acidosis in dairy cows: The physiological causes, incidence and consequences

(2008) J.C. Plaizier et al.   VETERINARY JOURNAL

Effects of dietary short-chain fructooligosaccharides on the intestinal microflora of horses subjected to a sudden change in diet

(2007) F. Respondek et al.   JOURNAL OF ANIMAL SCIENCE