Population Genomic Analysis of North American Eastern Wolves (Canis lycaon) Supports Their Conservation Priority Status

Effect of hybridization with genome exclusion on extinction risk

(2018) Claudio S. Quilodrán et al.   CONSERVATION BIOLOGY

Is the Red Wolf a Listable Unit Under the US Endangered Species Act?

(2018) Robin S Waples et al.   JOURNAL OF HEREDITY

Neutral Theory Is the Foundation of Conservation Genetics

(2018) Anne D Yoder et al.   MOLECULAR BIOLOGY AND EVOLUTION

Breaking Barriers: Causes, Consequences, and Experimental Utility of Human-Mediated Hybridization

(2018) Kathryn C. Grabenstein et al.   TRENDS IN ECOLOGY & EVOLUTION

Partial genomic survival of cave bears in living brown bears

(2018) Axel Barlow et al.   Nature Ecology & Evolution

Redefining the Role of Admixture and Genomics in Species Conservation

(2017) Bridgett M. vonHoldt et al.   Conservation Letters

Patchy distribution and low effective population size raise concern for an at-risk top predator

(2016) Linda Y. Rutledge et al.   DIVERSITY AND DISTRIBUTIONS

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf

(2016) B. M. vonHoldt et al.   Science Advances

Factors influencing red wolf–coyote hybridization in eastern North Carolina, USA

(2015) Justin H. Bohling et al.   BIOLOGICAL CONSERVATION

RAD sequencing and genomic simulations resolve hybrid origins within North AmericanCanis: Figure 1.

(2015) L. Y. Rutledge et al.   Biology Letters

Adaptive introgression as a resource for management and genetic conservation in a changing climate

(2015) Jill A. Hamilton et al.   CONSERVATION BIOLOGY

A framework to guide the conservation of species hybrids based on ethical and ecological considerations

(2015) Raeya N. Jackiw et al.   CONSERVATION BIOLOGY

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species

(2015) Klaus-Peter Koepfli et al.   CURRENT BIOLOGY

Managing hybridization of a recovering endangered species: The red wolfCanis rufusas a case study

(2015) Eric M. Gese et al.   Current Zoology

Modelling interspecific hybridization with genome exclusion to identify conservation actions: the case of native and invasivePelophylaxwaterfrogs

(2015) Claudio S. Quilodrán et al.   Evolutionary Applications

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Effects of anthropogenic mortality on Critically Endangered red wolf Canis rufus breeding pairs: implications for red wolf recovery

(2015) Joseph W. Hinton et al.   ORYX

Managing hybridization of a recovering endangered species: The red wolfCanis rufusas a case study

(2015) Eric M. Gese et al.   Current Zoology

A protected area influences genotype-specific survival and the structure of aCanishybrid zone

(2014) John F. Benson et al.   ECOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

(2014) Gad Abraham et al.   PLoS One

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Inter-specific territoriality in a Canis hybrid zone: spatial segregation between wolves, coyotes, and hybrids

(2013) John F. Benson et al.   OECOLOGIA

Conservation genomics in perspective: A holistic approach to understanding Canis evolution in North America

(2012) Linda Y. Rutledge et al.   BIOLOGICAL CONSERVATION

The cybrid invasion: widespread postglacial dispersal by Phoxinus (Pisces: Cyprinidae) cytoplasmic hybrids

(2012) J.A. Mee et al.   CANADIAN JOURNAL OF ZOOLOGY

Spatial genetic and morphologic structure of wolves and coyotes in relation to environmental heterogeneity in aCanishybrid zone

(2012) John F. Benson et al.   MOLECULAR ECOLOGY

Ecosystem restoration with teeth: what role for predators?

(2012) Euan G. Ritchie et al.   TRENDS IN ECOLOGY & EVOLUTION

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Broken barriers: Human-induced changes to gene flow and introgression in animals

(2011) Erika Crispo et al.   BIOESSAYS

Genetic and morphological divergence in island and mainland birds: Informing conservation priorities

(2011) Rachael Y. Dudaniec et al.   BIOLOGICAL CONSERVATION

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

Coyote colonization of northern Virginia and admixture with Great Lakes wolves

(2011) Christine A. Bozarth et al.   JOURNAL OF MAMMALOGY

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

Genomic divergence during speciation: causes and consequences

(2011) P. Nosil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Intense harvesting of eastern wolves facilitated hybridization with coyotes

(2011) Linda Y. Rutledge et al.   Ecology and Evolution

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Genetic differentiation of eastern wolves in Algonquin Park despite bridging gene flow between coyotes and grey wolves

(2010) L Y Rutledge et al.   HEREDITY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Rapid adaptive evolution of northeastern coyotes via hybridization with wolves

(2009) R. Kays et al.   Biology Letters

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Genetic Characterization of Hybrid Wolves across Ontario

(2009) Paul J. Wilson et al.   JOURNAL OF HEREDITY

Origin and status of the Great Lakes wolf

(2009) STEPHAN KOBLMÜLLER et al.   MOLECULAR ECOLOGY

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Inference of structure in subdivided populations at low levels of genetic differentiation—the correlated allele frequencies model revisited

(2008) Gilles Guillot   BIOINFORMATICS

ADZE: a rarefaction approach for counting alleles private to combinations of populations

(2008) Z. A. Szpiech et al.   BIOINFORMATICS

Purifying selection of mtDNA and its implications for understanding evolution and mitochondrial disease

(2008) James Bruce Stewart et al.   NATURE REVIEWS GENETICS

Speciation reversal and biodiversity dynamics with hybridization in changing environments

(2007) OLE SEEHAUSEN et al.   MOLECULAR ECOLOGY