A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum

Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms

(2018) Achal Rastogi et al.   Scientific Reports

Carbon assimilation and losses during an ocean acidification mesocosm experiment, with special reference to algal blooms

(2017) Nana Liu et al.   MARINE ENVIRONMENTAL RESEARCH

Epigenetic and Genetic Contributions to Adaptation in Chlamydomonas

(2017) Ilkka Kronholm et al.   MOLECULAR BIOLOGY AND EVOLUTION

An atlas of human long non-coding RNAs with accurate 5′ ends

(2017) Chung-Chau Hon et al.   NATURE

Influence of diatom diversity on the ocean biological carbon pump

(2017) Paul Tréguer et al.   Nature Geoscience

Ocean acidification modulates expression of genes and physiological performance of a marine diatom

(2017) Yahe Li et al.   PLoS One

A Relay Race on the Evolutionary Adaptation Spectrum

(2015) Avihu H. Yona et al.   CELL

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

(2015) Magali Lescot et al.   ISME Journal

Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations

(2015) Maria Helena Cruz de Carvalho et al.   NEW PHYTOLOGIST

Light and CO2/cAMP Signal Cross Talk on the Promoter Elements of Chloroplasticβ-Carbonic Anhydrase Genes in the Marine DiatomPhaeodactylum tricornutum

(2015) Atsushi Tanaka et al.   PLANT PHYSIOLOGY

Contrasting futures for ocean and society from different anthropogenic CO2 emissions scenarios

(2015) J.- P. Gattuso et al.   SCIENCE

Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression

(2015) Gwenn M. M. Hennon et al.   Nature Climate Change

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum

(2015) Alaguraj Veluchamy et al.   GENOME BIOLOGY

Photophysiological responses of marine diatoms to elevated CO2 and decreased pH: a review

(2014) Kunshan Gao et al.   FUNCTIONAL PLANT BIOLOGY

Bursts of transposable elements as an evolutionary driving force

(2014) A. Belyayev   JOURNAL OF EVOLUTIONARY BIOLOGY

Methylcrotonyl-CoA Carboxylase Regulates Triacylglycerol Accumulation in the Model Diatom Phaeodactylum tricornutum

(2014) F. Ge et al.   PLANT CELL

Light-Modulated Responses of Growth and Photosynthetic Performance to Ocean Acidification in the Model Diatom Phaeodactylum tricornutum

(2014) Yahe Li et al.   PLoS One

Transposable element islands facilitate adaptation to novel environments in an invasive species

(2014) Lukas Schrader et al.   Nature Communications

Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective

(2013) P. P. Amaral et al.   Briefings in Functional Genomics

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Rubisco is a small fraction of total protein in marine phytoplankton

(2013) Jenna L. Losh et al.   NEW PHYTOLOGIST

Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts

(2013) M. Kleiner et al.   mBio

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

(2013) Alaguraj Veluchamy et al.   Nature Communications

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs

(2012) F. Niazi et al.   RNA

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

Epigenetic Regulation by Long Noncoding RNAs

(2012) J. T. Lee   SCIENCE

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Localization of putative carbonic anhydrases in two marine diatoms, Phaeodactylum tricornutum and Thalassiosira pseudonana

(2011) Masaaki Tachibana et al.   PHOTOSYNTHESIS RESEARCH

Efficiency of the CO2-concentrating mechanism of diatoms

(2011) B. M. Hopkinson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Voltage-Gated H+ Channel Underlying pH Homeostasis in Calcifying Coccolithophores

(2011) Alison R. Taylor et al.   PLOS BIOLOGY

Heat shock factors: integrators of cell stress, development and lifespan

(2010) Malin Åkerfelt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles

(2010) Edda Rayko et al.   NEW PHYTOLOGIST

Transposases are the most abundant, most ubiquitous genes in nature

(2010) Ramy K. Aziz et al.   NUCLEIC ACIDS RESEARCH

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

Transposable elements and an epigenetic basis for punctuated equilibria

(2009) David W. Zeh et al.   BIOESSAYS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

(2009) Florian Maumus et al.   BMC GENOMICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE