Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations

Long noncoding RNA transcriptome of plants

(2015) Jun Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Regulation of Transcription by Long Noncoding RNAs

(2014) Roberto Bonasio et al.   Annual Review of Genetics

Sources and resources: importance of nutrients, resource allocation, and ecology in microalgal cultivation for lipid accumulation

(2014) Matthew W. Fields et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Global discovery and characterization of small non-coding RNAs in marine microalgae

(2014) Sara Lopez-Gomollon et al.   BMC GENOMICS

The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum

(2014) Alessandra Rogato et al.   BMC GENOMICS

Systems-level analysis of the metabolic responses of the diatomPhaeodactylum tricornutumto phosphorus stress

(2014) Zhi-Kai Yang et al.   ENVIRONMENTAL MICROBIOLOGY

Membrane Glycerolipid Remodeling Triggered by Nitrogen and Phosphorus Starvation inPhaeodactylum tricornutum

(2014) Heni Abida et al.   PLANT PHYSIOLOGY

Remodeling of intermediate metabolism in the diatomPhaeodactylum tricornutumunder nitrogen stress

(2014) Orly Levitan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular and cellular mechanisms of neutral lipid accumulation in diatom following nitrogen deprivation

(2013) Zhi-Kai Yang et al.   Biotechnology for Biofuels

Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics

(2013) Jesse A Port et al.   BMC GENOMICS

Identification and Characterization of an Extracellular Alkaline Phosphatase in the Marine Diatom Phaeodactylum tricornutum

(2013) Hung-Yun Lin et al.   MARINE BIOTECHNOLOGY

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

(2013) Henrik Nordberg et al.   NUCLEIC ACIDS RESEARCH

Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants

(2013) H.-J. Wu et al.   PLANT PHYSIOLOGY

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana

(2012) Roshan Shrestha et al.   BMC GENOMICS

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response

(2012) Sonya T. Dyhrman et al.   PLoS One

Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein

(2012) E. M. Bertrand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs

(2012) F. Niazi et al.   RNA

Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis

(2011) Aiyou Huang et al.   BMC GENOMICS

No-Nonsense Functions for Long Noncoding RNAs

(2011) Takashi Nagano et al.   CELL

TAG, You’re it! Chlamydomonas as a reference organism for understanding algal triacylglycerol accumulation

(2011) Sabeeha S Merchant et al.   CURRENT OPINION IN BIOTECHNOLOGY

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Whole-genome expression analysis reveals a role for death-related genes in stress acclimation of the diatom Thalassiosira pseudonana

(2011) Kimberlee Thamatrakoln et al.   ENVIRONMENTAL MICROBIOLOGY

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms

(2011) Andrew E. Allen et al.   NATURE

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Long non-coding RNAs and chromatin regulation

(2010) Filomena De Lucia et al.   CURRENT OPINION IN PLANT BIOLOGY

Phosphorus supply drives rapid turnover of membrane phospholipids in the diatom Thalassiosira pseudonana

(2010) Patrick Martin et al.   ISME Journal

Heat shock factors: integrators of cell stress, development and lifespan

(2010) Malin Åkerfelt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles

(2010) Edda Rayko et al.   NEW PHYTOLOGIST

Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity

(2009) Benjamin A. S. Van Mooy et al.   NATURE

Gene silencing in the marine diatom Phaeodactylum tricornutum

(2009) Valentina De Riso et al.   NUCLEIC ACIDS RESEARCH

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

Subcellular localization of marine bacterial alkaline phosphatases

(2009) Haiwei Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis

(2008) Nicole Gaude et al.   PLANT JOURNAL

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

(2008) A. E. Allen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses

(2008) T. Mock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA