Changes in Transcriptome of Yersinia pseudotuberculosis IP32953 Grown at 3 and 28°C Detected by RNA Sequencing Shed Light on Cold Adaptation

Growth of Yersinia pseudotuberculosis Strains at Different Temperatures, pH Values, and NaCl and Ethanol Concentrations

(2018) Riikka Keto-Timonen et al.   JOURNAL OF FOOD PROTECTION

Yersinia spp. in Wild Rodents and Shrews in Finland

(2017) Suvi Joutsen et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

New insights in cyanobacterial cold stress responses: Genes, sensors, and molecular triggers

(2016) Maria A. Sinetova et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Yersiniosis in France: overview and potential sources of infection

(2016) Anne-Sophie Le Guern et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Distribution of cold adaptation proteins in microbial mats in Lake Joyce, Antarctica: Analysis of metagenomic data by using two bioinformatics tools

(2016) Hyunmin Koo et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Biosynthesis and uptake of glycine betaine as cold-stress response to low temperature in fish pathogen Vibrio anguillarum

(2016) Yue Ma et al.   JOURNAL OF MICROBIOLOGY

Cold Shock Proteins: A Minireview with Special Emphasis on Csp-family of Enteropathogenic Yersinia

(2016) Riikka Keto-Timonen et al.   Frontiers in Microbiology

Outbreak ofYersinia pseudotuberculosisO:1 infection associated with raw milk consumption, Finland, spring 2014

(2015) Triin Pärn et al.   Eurosurveillance

Role of csp genes in NaCl, pH, and ethanol stress response and motility in Clostridium botulinum ATCC 3502

(2015) Yağmur Derman et al.   FOOD MICROBIOLOGY

Functional csdA is needed for effective adaptation and initiation of growth of Clostridium botulinum ATCC 3502 at suboptimal temperature

(2015) Henna Söderholm et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Bacterial Transcription Termination Factor Rho Coordinates Mg2+ Homeostasis with Translational Signals

(2015) Michelle A. Kriner et al.   JOURNAL OF MOLECULAR BIOLOGY

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

Model Uracil-Rich RNAs and Membrane Protein mRNAs Interact Specifically with Cold Shock Proteins in Escherichia coli

(2015) Daniel Benhalevy et al.   PLoS One

Comparative Genomic Hybridization Analysis ofYersinia enterocoliticaandYersinia pseudotuberculosisIdentifies Genetic Traits to Elucidate Their Different Ecologies

(2015) Kaisa Jaakkola et al.   Biomed Research International

Long-Term Persistence of Yersinia pseudotuberculosis in Entomopathogenic Nematodes

(2015) Samuel Gengler et al.   PLoS One

QuasR: quantification and annotation of short reads in R

(2014) Dimos Gaidatzis et al.   BIOINFORMATICS

Expression of csp genes in E. coli K-12 in defined rich and defined minimal media during normal growth, and after cold-shock

(2014) Tiffaney R. Czapski et al.   GENE

Yersinia pseudotuberculosis infections in goats and other animals diagnosed at the California Animal Health and Food Safety Laboratory System: 1990–2012

(2014) Federico Giannitti et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Transcriptomic Analysis of (Group I) Clostridium botulinum ATCC 3502 Cold Shock Response

(2014) Elias Dahlsten et al.   PLoS One

Phyletic distribution and conservation of the bacterial transcription termination factor Rho

(2013) F. D'Heygere et al.   MICROBIOLOGY-SGM

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Genes encoding putative DEAD-box RNA helicases in Listeria monocytogenes EGD-e are needed for growth and motility at 3°C

(2012) Annukka Markkula et al.   ENVIRONMENTAL MICROBIOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Proteomic insights into cold adaptation of psychrotrophic and mesophilic Acidithiobacillus ferrooxidans strains

(2011) Nadia C. S. Mykytczuk et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Requirement for RNA Helicase CsdA for Growth of Yersinia pseudotuberculosis IP32953 at Low Temperatures

(2011) Eveliina Palonen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

cspB encodes a major cold shock protein in Clostridium botulinum ATCC 3502

(2011) H. Söderholm et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Protection of Bacillus subtilis against Cold Stress via Compatible-Solute Acquisition

(2011) T. Hoffmann et al.   JOURNAL OF BACTERIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

ProOpDB: Prokaryotic Operon DataBase

(2011) B. Taboada et al.   NUCLEIC ACIDS RESEARCH

Expression of Signal Transduction System Encoding Genes of Yersinia pseudotuberculosis IP32953 at 28°C and 3°C

(2011) Eveliina Palonen et al.   PLoS One

Unwinding activity of cold shock proteins and RNA metabolism

(2011) Sangita Phadtare   RNA Biology

Altered Growth, Pigmentation, and Antimicrobial Susceptibility Properties of Staphylococcus aureus Due to Loss of the Major Cold Shock Gene cspB

(2010) B. D. Duval et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

(2010) Thomas J Hardcastle et al.   BMC BIOINFORMATICS

Adaptation of enteropathogenicYersiniato low growth temperature

(2010) Eveliina Palonen et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Increase in Oxidative Stress at Low Temperature in an Antarctic Bacterium

(2010) M. K. Chattopadhyay et al.   CURRENT MICROBIOLOGY

Differences in Cold Adaptation of Bacillus subtilis under Anaerobic and Aerobic Conditions

(2010) J. Beranova et al.   JOURNAL OF BACTERIOLOGY

Proteomics of life at low temperatures: trigger factor is the primary chaperone in the Antarctic bacteriumPseudoalteromonas haloplanktisTAC125

(2010) Florence Piette et al.   MOLECULAR MICROBIOLOGY

Metabolomic and transcriptomic stress response of Escherichia coli

(2010) Szymon Jozefczuk et al.   Molecular Systems Biology

Toxins Hha and CspD and small RNA regulator Hfq are involved in persister cell formation through MqsR in Escherichia coli

(2009) Younghoon Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Effect of trehalose on protein structure

(2009) Nishant Kumar Jain et al.   PROTEIN SCIENCE

Role of proP and proU in Betaine Uptake by Yersinia enterocolitica under Cold and Osmotic Stress Conditions

(2008) T. Annamalai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transmission of Yersinia pseudotuberculosis in the Pork Production Chain from Farm to Slaughterhouse

(2008) R. Laukkanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Yersinia pseudotuberculosis causing a large outbreak associated with carrots in Finland, 2006

(2008) R. RIMHANEN-FINNE et al.   EPIDEMIOLOGY AND INFECTION

Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA

(2008) Lauri Peil et al.   FEBS Journal

Antibiotics, arsenate and H2O2induce the promoter ofStaphylococcus aureus cspCgene more strongly than cold

(2008) Palas Kumar Chanda et al.   JOURNAL OF BASIC MICROBIOLOGY