A bacterial immunomodulatory protein with lipocalin-like domains facilitates host–bacteria mutualism in larval zebrafish

Modernized Tools for Streamlined Genetic Manipulation and Comparative Study of Wild and Diverse Proteobacterial Lineages

(2018) Travis J. Wiles et al.   mBio

Ectopic Expression of Innate Immune Protein, Lipocalin-2, in Lactococcus lactis Protects Against Gut and Environmental Stressors

(2017) Piu Saha et al.   INFLAMMATORY BOWEL DISEASES

Development of a Zebrafish Sepsis Model for High-Throughput Drug Discovery

(2017) Anju M Philip et al.   MOLECULAR MEDICINE

Interhost dispersal alters microbiome assembly and can overwhelm host innate immunity in an experimental zebrafish model

(2017) Adam R. Burns et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipocalin-2: A Master Mediator of Intestinal and Metabolic Inflammation

(2017) Alexander R. Moschen et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance

(2017) Omar M. El-Halfawy et al.   mBio

The enteric nervous system promotes intestinal health by constraining microbiota composition

(2017) Annah S. Rolig et al.   PLOS BIOLOGY

Helicobacter pylori Secreted Protein HP1286 Triggers Apoptosis in Macrophages via TNF-Independent and ERK MAPK-Dependent Pathways

(2017) Raquel Tavares et al.   Frontiers in Cellular and Infection Microbiology

Lipocalin 2 Protects from Inflammation and Tumorigenesis Associated with Gut Microbiota Alterations

(2016) Alexander R. Moschen et al.   Cell Host & Microbe

Peroxiredoxin Catalysis at Atomic Resolution

(2016) Arden Perkins et al.   STRUCTURE

Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota

(2016) Travis J Wiles et al.   PLOS BIOLOGY

The Structure of Treponema pallidum Tp0751 (Pallilysin) Reveals a Non-canonical Lipocalin Fold That Mediates Adhesion to Extracellular Matrix Components and Interactions with Host Cells

(2016) Michelle L. Parker et al.   PLoS Pathogens

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

(2016) Jennifer Hampton Hill et al.   eLife

Investigating Bacterial-Animal Symbioses with Light Sheet Microscopy

(2016) Michael J. Taormina et al.   BIOLOGICAL BULLETIN

Lipocalin 2 prevents intestinal inflammation by enhancing phagocytic bacterial clearance in macrophages

(2016) Takahiko Toyonaga et al.   Scientific Reports

Individual Members of the Microbiota Disproportionately Modulate Host Innate Immune Responses

(2015) Annah S. Rolig et al.   Cell Host & Microbe

Identification of an anti-inflammatory protein fromFaecalibacterium prausnitzii, a commensal bacterium deficient in Crohn’s disease

(2015) E Quévrain et al.   GUT

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Biochemical and Structural Characterization of the Interaction between the Siderocalin NGAL/LCN2 (Neutrophil Gelatinase-associated Lipocalin/Lipocalin 2) and the N-terminal Domain of Its Endocytic Receptor SLC22A17

(2015) Ana-Isabel Cabedo Martinez et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Neutrophils in host defense: new insights from zebrafish

(2015) E. A. Harvie et al.   JOURNAL OF LEUKOCYTE BIOLOGY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Dimerization of lipocalin allergens

(2015) Merja H. Niemi et al.   Scientific Reports

Identification of iron and heme utilization genes in Aeromonas and their role in the colonization of the leech digestive tract

(2015) Michele Maltz et al.   Frontiers in Microbiology

Structure-Based Phylogenetic Analysis of the Lipocalin Superfamily

(2015) Balasubramanian Lakshmi et al.   PLoS One

Inflammatory Bowel Disease as a Model for Translating the Microbiome

(2014) Curtis Huttenhower et al.   IMMUNITY

The Commensal Bacterium Faecalibacterium prausnitzii Is Protective in DNBS-induced Chronic Moderate and Severe Colitis Models

(2014) Rebeca Martín et al.   INFLAMMATORY BOWEL DISEASES

Spatial and Temporal Features of the Growth of a Bacterial Species Colonizing the Zebrafish Gut

(2014) Matthew Jemielita et al.   mBio

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Commensal microbiota stimulate systemic neutrophil migration through induction of Serum amyloid A

(2013) Michelle Kanther et al.   CELLULAR MICROBIOLOGY

Soybean Meal Induces Intestinal Inflammation in Zebrafish Larvae

(2013) Manuel I. Hedrera et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Faecalibacterium prausnitzii supernatant improves intestinal barrier function in mice DSS colitis

(2013) Anders H Carlsson et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature

(2013) J. Kern et al.   SCIENCE

A model 450 million years in the making: zebrafish and vertebrate immunity

(2012) S. A. Renshaw et al.   Disease Models & Mechanisms

Identification of patterns in diffraction intensities affected by radiation exposure

(2012) Dominika Borek et al.   JOURNAL OF SYNCHROTRON RADIATION

Fecal Lipocalin 2, a Sensitive and Broadly Dynamic Non-Invasive Biomarker for Intestinal Inflammation

(2012) Benoit Chassaing et al.   PLoS One

Linking Crystallographic Model and Data Quality

(2012) P. A. Karplus et al.   SCIENCE

Modulation of Glial and Neuronal Migration by Lipocalin-2 in Zebrafish

(2012) Ho Kim et al.   Immune Network

iMOSFLM: a new graphical interface for diffraction-image processing withMOSFLM

(2011) T. Geoff G. Battye et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88

(2011) Erik Larsson et al.   GUT

Colon-specific delivery of a probiotic-derived soluble protein ameliorates intestinal inflammation in mice through an EGFR-dependent mechanism

(2011) Fang Yan et al.   JOURNAL OF CLINICAL INVESTIGATION

The Toll-Like Receptor 2 Pathway Establishes Colonization by a Commensal of the Human Microbiota

(2011) J. L. Round et al.   SCIENCE

Diffraction data analysis in the presence of radiation damage

(2010) Dominika Borek et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Type II Secretion System Is Essential for Erythrocyte Lysis and Gut Colonization by the Leech Digestive Tract SymbiontAeromonas veronii

(2010) Michele Maltz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Origin of Multiple Molecular Forms in Urine of HNL/NGAL

(2010) L. Cai et al.   Clinical Journal of the American Society of Nephrology

Helicobacter pylori acidic stress response factor HP1286 is a YceI homolog with new binding specificity

(2010) Lorenza Sisinni et al.   FEBS Journal

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

(2010) J. L. Round et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88

(2010) S. E. Cheesman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

A microbial symbiosis factor prevents intestinal inflammatory disease

(2008) Sarkis K. Mazmanian et al.   NATURE

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

(2008) Li Wen et al.   NATURE

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA