Whole-Genome Sequencing of Chinese Yellow Catfish Provides a Valuable Genetic Resource for High-Throughput Identification of Toxin Genes

Thrombin-like enzymes from snake venom: Structural characterization and mechanism of action

(2018) Anwar Ullah et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Proteomic characterization of six Taiwanese snake venoms: Identification of species-specific proteins and development of a SISCAPA-MRM assay for cobra venom factors

(2018) Chien-Chun Liu et al.   Journal of Proteomics

Accelerated evolution of toxin genes: Exonization and intronization in snake venom disintegrin/metalloprotease genes

(2018) R. Manjunatha Kini   TOXICON

Adaptive evolution of distinct prey-specific toxin genes in rear-fanged snake venom

(2018) Cassandra M. Modahl et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes

(2018) Shengyong Xu et al.   GigaScience

From Marine Venoms to Drugs: Efficiently Supported by a Combination of Transcriptomics and Proteomics

(2017) Bing Xie et al.   Marine Drugs

Identification of B cell recognized linear epitopes in a snake venom serine proteinase from the central American bushmaster Lachesis stenophrys

(2017) M. Madrigal et al.   TOXICON

Nerve growth factor from Chinese cobra venom stimulates chondrogenic differentiation of mesenchymal stem cells

(2017) Zhenhui lu et al.   Cell Death & Disease

Enter the Dragon: The Dynamic and Multifunctional Evolution of Anguimorpha Lizard Venoms

(2017) Ivan Koludarov et al.   Toxins

Proteomics and antivenomics of Echis carinatus carinatus venom: Correlation with pharmacological properties and pathophysiology of envenomation

(2017) Aparup Patra et al.   Scientific Reports

High-resolution proteomic profiling of spider venom: expanding the toxin diversity of Phoneutria nigriventer venom

(2016) Tarcísio Liberato et al.   AMINO ACIDS

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Divergent functional profiles of acidic and basic phospholipases A2 in the venom of the snake Porthidium lansbergii lansbergii

(2016) Eliécer Jiménez-Charris et al.   TOXICON

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

(2016) Shubha Vij et al.   PLoS Genetics

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

(2016) Alvaro Martinez Barrio et al.   eLife

High-throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcriptome sequencing

(2016) Chao Peng et al.   GigaScience

High-quality genome assembly of channel catfish, Ictalurus punctatus

(2016) Xiaohui Chen et al.   GigaScience

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

(2016) Chengxi Ye et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Gene duplications are extensive and contribute significantly to the toxic proteome of nematocysts isolated from Acropora digitifera (Cnidaria: Anthozoa: Scleractinia)

(2015) Ranko Gacesa et al.   BMC GENOMICS

Snake venom serine proteinases specificity mapping by proteomic identification of cleavage sites

(2015) André Zelanis et al.   Journal of Proteomics

Genetic and genomic analyses for economically important traits and their applications in molecular breeding of cultured fish

(2015) JinGou Tong et al.   Science China-Life Sciences

Unraveling the venom proteome of the bumblebee (Bombus terrestris) by integrating a combinatorial peptide ligand library approach with FT-ICR MS

(2015) Matthias Van Vaerenbergh et al.   TOXICON

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Sex-Biased miRNAs in Gonad and Their Potential Roles for Testis Development in Yellow Catfish

(2014) Jing Jing et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Freshwater aquaculture in PR China: trends and prospects

(2014) Qidong Wang et al.   Reviews in Aquaculture

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes

(2014) Xinxin You et al.   Nature Communications

The draft genome of the large yellow croaker reveals well-developed innate immunity

(2014) Changwen Wu et al.   Nature Communications

Crovirin, a Snake Venom Cysteine-Rich Secretory Protein (CRISP) with Promising Activity against Trypanosomes and Leishmania

(2014) Camila M. Adade et al.   PLoS Neglected Tropical Diseases

Genetic Differentiation and Efficient Sex-specific Marker Development of a Pair of Y- and X-linked Markers in Yellow Catfish

(2013) Cheng Dan et al.   International Journal of Biological Sciences

GapFiller: a de novo assembly approach to fill the gap within paired reads

(2012) Francesca Nadalin et al.   BMC BIOINFORMATICS

Molecular basis and genetic improvement of economically important traits in aquaculture animals

(2012) JianFang Gui et al.   CHINESE SCIENCE BULLETIN

Novel venom peptides from the cone snail Conus pulicarius discovered through next-generation sequencing of its venom duct transcriptome

(2012) Arturo O. Lluisma et al.   Marine Genomics

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Complex cocktails: the evolutionary novelty of venoms

(2012) Nicholas R. Casewell et al.   TRENDS IN ECOLOGY & EVOLUTION

Sequence-specific error profile of Illumina sequencers

(2011) Kensuke Nakamura et al.   NUCLEIC ACIDS RESEARCH

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Identification of a Novel Family of Snake Venom Proteins Veficolins fromCerberus rynchopsUsing a Venom Gland Transcriptomics and Proteomics Approach

(2010) G. OmPraba et al.   JOURNAL OF PROTEOME RESEARCH

AZGP1 Autoantibody Predicts Survival and Histone Deacetylase Inhibitors Increase Expression in Lung Adenocarcinoma

(2010) Daniel L. Albertus et al.   Journal of Thoracic Oncology

The metzincins - Topological and sequential relations between the astacins, adamalysins, serralysins, and matrixins (collagenases) define a super family of zinc-peptidases

(2010) Walter Stöcker et al.   PROTEIN SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH