Niche adaptation and viral transmission of human papillomaviruses from archaic hominins to modern humans

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150,000-year palaeoclimate record from northern Ethiopia supports early, multiple dispersals of modern humans from Africa

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Deciphering the Multifactorial Susceptibility of Mucosal Junction Cells to HPV Infection and Related Carcinogenesis

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HPV16 Sublineage Associations With Histology-Specific Cancer Risk Using HPV Whole-Genome Sequences in 3200 Women

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MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

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Transmission between Archaic and Modern Human Ancestors during the Evolution of the Oncogenic Human Papillomavirus 16

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(2016) Matthias Meyer et al.   NATURE

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Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals

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Analysis of human papillomavirus 16 variants and risk for cervical cancer in Chinese population

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Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus

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The Ancient Evolutionary History of Polyomaviruses

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HPV16 Sublineage Associations With Histology-Specific Cancer Risk Using HPV Whole-Genome Sequences in 3200 Women

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Small Amounts of Archaic Admixture Provide Big Insights into Human History

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A global reference for human genetic variation

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Evidence for archaic adaptive introgression in humans

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HPV Infection and Cervical Screening in Socially Isolated Indigenous Women Inhabitants of the Amazonian Rainforest

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Genomic evidence for the Pleistocene and recent population history of Native Americans

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Human Papillomaviruses; Epithelial Tropisms, and the Development of Neoplasia

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Genome sequence of a 45,000-year-old modern human from western Siberia

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The impact of whole-genome sequencing on the reconstruction of human population history

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Neandertal roots: Cranial and chronological evidence from Sima de los Huesos

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Human Leukocyte Antigen Class I and II Alleles and Cervical Adenocarcinoma

(2014) Mahboobeh Safaeian et al.   Frontiers in Oncology

Carcinogenic HPV prevalence and age-specific type distribution in 40,382 women with normal cervical cytology, ASCUS/LSIL, HSIL, or cervical cancer: what is the potential for prevention?

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Palaeontological evidence for an Oligocene divergence between Old World monkeys and apes

(2013) Nancy J. Stevens et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

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Divergence Times and the Evolutionary Radiation of New World Monkeys (Platyrrhini, Primates): An Analysis of Fossil and Molecular Data

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(2013) Robert D. Burk et al.   VIROLOGY

The Extraordinary Evolutionary History of the Reticuloendotheliosis Viruses

(2013) Anna Maria Niewiadomska et al.   PLOS BIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

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Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers

(2012) Joseph Lachance et al.   CELL

Human Papillomavirus Type 16 Genetic Variants: Phylogeny and Classification Based on E6 and LCR

(2012) I. Cornet et al.   JOURNAL OF VIROLOGY

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human Papillomavirus (HPV) Genotypes in Women with Cervical Precancer and Cancer at Kaiser Permanente Northern California

(2011) P. E. Castle et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Quantifying the Phylodynamic Forces Driving Papillomavirus Evolution

(2011) M. Gottschling et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence Imputation of HPV16 Genomes for Genetic Association Studies

(2011) Benjamin Smith et al.   PLoS One

Evolution and Taxonomic Classification of Human Papillomavirus 16 (HPV16)-Related Variant Genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67

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Archaic human ancestry in East Asia

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The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans

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Parallelization of the MAFFT multiple sequence alignment program

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pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

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A Population-Based Prospective Study of Carcinogenic Human Papillomavirus Variant Lineages, Viral Persistence, and Cervical Neoplasia

(2010) M. Schiffman et al.   CANCER RESEARCH

Human papillomavirus type distribution in 30,848 invasive cervical cancers worldwide: Variation by geographical region, histological type and year of publication

(2010) Ni Li et al.   INTERNATIONAL JOURNAL OF CANCER

Analysis of Host–Parasite Incongruence in Papillomavirus Evolution Using Importance Sampling

(2010) Seena D. Shah et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Novel Betapapillomavirus Associated With Hand and Foot Papillomas in a Cynomolgus Macaque

(2010) C. E. Wood et al.   VETERINARY PATHOLOGY

Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments

(2010) Hans-Ulrich Bernard et al.   VIROLOGY

Human papillomavirus infection in women with and without cervical cancer in Ibadan, Nigeria

(2010) Clement Okolo et al.   Infectious Agents and Cancer

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Macaca fascicularis papillomavirus type 1: a non-human primate betapapillomavirus causing rapidly progressive hand and foot papillomatosis

(2009) J. Joh et al.   JOURNAL OF GENERAL VIROLOGY

Human Papillomavirus Infection and Cervical Cytology in HIV‐Infected and HIV‐Uninfected Rwandan Women

(2009) Diljeet K. Singh et al.   JOURNAL OF INFECTIOUS DISEASES

Genetic diversity of human papillomavirus type 16 E6, E7, and L1 genes in Italian women with different grades of cervical lesions

(2009) Valeria Cento et al.   JOURNAL OF MEDICAL VIROLOGY

Human Papillomaviruses: Genetic Basis of Carcinogenicity

(2009) Robert D. Burk et al.   Public Health Genomics

Detection of Human Papillomavirus From Self-Collected Vaginal Samples of Women in Chiang Mai, Thailand

(2009) Kanlaya Wongworapat et al.   SEXUALLY TRANSMITTED DISEASES

Human papillomavirus genotypes and phylogenetic analysis of HPV-16 variants in HIV-1 infected subjects in Italy

(2009) Elisabetta Tanzi et al.   VACCINE

Genomic diversity and interspecies host infection of α12 Macaca fascicularis papillomaviruses (MfPVs)

(2009) Zigui Chen et al.   VIROLOGY

Entire genome characterization of human papillomavirus type 16 from infected Thai women with different cytological findings

(2009) Woradee Lurchachaiwong et al.   VIRUS GENES

Human papillomavirus type 16 variants in cervical intraepithelial neoplasia and invasive carcinoma in San Luis Potosí City, Mexico

(2009) Rubén López-Revilla et al.   Infectious Agents and Cancer

Interaction between polymorphisms of the Human Leukocyte Antigen and HPV-16 Variants on the risk of invasive cervical cancer

(2008) Patricia S de Araujo Souza et al.   BMC CANCER

Comprehensive Analysis of HLA-A, HLA-B, HLA-C, HLA-DRB1, and HLA-DQB1 Loci and Squamous Cell Cervical Cancer Risk

(2008) M. M. Madeleine et al.   CANCER RESEARCH

Human papillomavirus (HPV) genotypes and HPV16 variants in human immunodeficiency virus-positive Italian women

(2008) M. L. Tornesello et al.   JOURNAL OF GENERAL VIROLOGY

Human papillomavirus type 16 variants in cervical cancer from an admixtured population in Brazil

(2008) Katiana Junes-Gill et al.   JOURNAL OF MEDICAL VIROLOGY