RNA virus evasion of nonsense-mediated decay

The UPF1 interactome reveals interaction networks between RNA degradation and translation repression factors in Arabidopsis

(2018) Clara Chicois et al.   PLANT JOURNAL

Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo

(2018) David J. Young et al.   MOLECULAR CELL

A system for coordinated analysis of translational readthrough and nonsense-mediated mRNA decay

(2017) Stacey L. Baker et al.   PLoS One

Virus Escape and Manipulation of Cellular Nonsense-Mediated mRNA Decay

(2017) Giuseppe Balistreri et al.   Viruses-Basel

Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution

(2017) Barry Causier et al.   Scientific Reports

A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells

(2016) Naoto Imamachi et al.   GENOME RESEARCH

Viral Evasion and Manipulation of Host RNA Quality Control Pathways

(2016) J. Robert Hogg   JOURNAL OF VIROLOGY

An RNA Element That Facilitates Programmed Ribosomal Readthrough in Turnip Crinkle Virus Adopts Multiple Conformations

(2016) Micki M. Kuhlmann et al.   JOURNAL OF VIROLOGY

Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways

(2016) Martino Colombo et al.   RNA

Structural basis of suppression of host translation termination by Moloney Murine Leukemia Virus

(2016) Xuhua Tang et al.   Nature Communications

Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3′UTRs In Vivo

(2015) David J. Young et al.   CELL

A Combined Proteomics/Genomics Approach Links Hepatitis C Virus Infection with Nonsense-Mediated mRNA Decay

(2015) Holly R. Ramage et al.   MOLECULAR CELL

Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes

(2015) Søren Lykke-Andersen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus

(2015) Feng Gao et al.   NUCLEIC ACIDS RESEARCH

Identification of elements in human long 3′ UTRs that inhibit nonsense-mediated decay

(2015) Kalodiah G. Toma et al.   RNA

Unique Aspects of Plant Nonsense-Mediated mRNA Decay

(2015) Orit Shaul   TRENDS IN PLANT SCIENCE

Dom34 Rescues Ribosomes in 3′ Untranslated Regions

(2014) Nicholas R. Guydosh et al.   CELL

Nonsense-Mediated Decay Serves as a General Viral Restriction Mechanism in Plants

(2014) Damien Garcia et al.   Cell Host & Microbe

The Host Nonsense-Mediated mRNA Decay Pathway Restricts Mammalian RNA Virus Replication

(2014) Giuseppe Balistreri et al.   Cell Host & Microbe

Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes

(2014) Søren Lykke-Andersen et al.   GENES & DEVELOPMENT

The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay

(2014) Tobias Fatscher et al.   RNA

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay

(2013) J. A. Hurt et al.   GENOME RESEARCH

Viral interference with host mRNA surveillance, the nonsense-mediated mRNA decay (NMD) pathway, through a new function of HTLV-1 Rex: implications for retroviral replication

(2013) Kazumi Nakano et al.   MICROBES AND INFECTION

Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome

(2013) G. Drechsel et al.   PLANT CELL

Non-canonical translation in RNA viruses

(2012) A. E. Firth et al.   JOURNAL OF GENERAL VIROLOGY

Isolation of an Asymmetric RNA Uncoating Intermediate for a Single-Stranded RNA Plant Virus

(2012) Saskia E. Bakker et al.   JOURNAL OF MOLECULAR BIOLOGY

The Human T-Lymphotropic Virus Type 1 Tax Protein Inhibits Nonsense-Mediated mRNA Decay by Interacting with INT6/EIF3E and UPF1

(2012) V. Mocquet et al.   JOURNAL OF VIROLOGY

A Local, Interactive Network of 3′ RNA Elements Supports Translation and Replication of Turnip Crinkle Virus

(2012) Xuefeng Yuan et al.   JOURNAL OF VIROLOGY

NMD: a multifaceted response to premature translational termination

(2012) Stephanie Kervestin et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Regulatory Impact of RNA Secondary Structure across the Arabidopsis Transcriptome

(2012) F. Li et al.   PLANT CELL

The late steps of plant nonsense-mediated mRNA decay

(2012) Zsuzsanna Mérai et al.   PLANT JOURNAL

Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability

(2012) Hidenori Tani et al.   RNA Biology

Global Analysis of RNA Secondary Structure in Two Metazoans

(2012) Fan Li et al.   Cell Reports

The structure and function of the rous sarcoma virus RNA stability element

(2011) Johanna B. Withers et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Ribosome Binding to a 5' Translational Enhancer Is Altered in the Presence of the 3' Untranslated Region in Cap-Independent Translation of Turnip Crinkle Virus

(2011) V. A. Stupina et al.   JOURNAL OF VIROLOGY

Autoregulation of the nonsense-mediated mRNA decay pathway in human cells

(2011) H. Yepiskoposyan et al.   RNA

Long-distance kissing loop interactions between a 3′ proximal Y-shaped structure and apical loops of 5′ hairpins enhance translation of Saguaro cactus virus

(2011) Maitreyi Chattopadhyay et al.   VIROLOGY

3′ Cap-independent translation enhancers of positive-strand RNA plant viruses

(2011) Beth L Nicholson et al.   Current Opinion in Virology

Multifaceted Regulation of Translational Readthrough by RNA Replication Elements in a Tombusvirus

(2011) Peter A. Cimino et al.   PLoS Pathogens

Upf1 Senses 3′UTR Length to Potentiate mRNA Decay

(2010) J. Robert Hogg et al.   CELL

Achieving a Golden Mean: Mechanisms by Which Coronaviruses Ensure Synthesis of the Correct Stoichiometric Ratios of Viral Proteins

(2010) E. P. Plant et al.   JOURNAL OF VIROLOGY

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry

(2009) Yair Horesh et al.   BMC BIOINFORMATICS

Disassembly of Exon Junction Complexes by PYM

(2009) Niels H. Gehring et al.   CELL

A Competition between Stimulators and Antagonists of Upf Complex Recruitment Governs Human Nonsense-Mediated mRNA Decay

(2008) Guramrit Singh et al.   PLOS BIOLOGY

Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3′ Untranslated Region

(2008) Andrea B Eberle et al.   PLOS BIOLOGY