Enabling precision medicine via standard communication of HTS provenance, analysis, and results

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

(2017) Sarah Cohen-Boulakia et al.   Future Generation Computer Systems-The International Journal of eScience

Abstract, link, publish, exploit: An end to end framework for workflow sharing

(2017) Daniel Garijo et al.   Future Generation Computer Systems-The International Journal of eScience

The FDA’s Experience with Emerging Genomics Technologies—Past, Present, and Future

(2016) Joshua Xu et al.   AAPS Journal

LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis

(2016) Jie Zheng et al.   BIOINFORMATICS

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

What does research reproducibility mean?

(2016) Steven N. Goodman et al.   Science Translational Medicine

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Experiences with workflows for automating data-intensive bioinformatics

(2015) Ola Spjuth et al.   Biology Direct

Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform: Figure 1.

(2015) Angela M. Starks et al.   CLINICAL INFECTIOUS DISEASES

Using a suite of ontologies for preserving workflow-centric research objects

(2015) Khalid Belhajjame et al.   Journal of Web Semantics

All the World's a Stage: Facilitating Discovery Science and Improved Cancer Care through the Global Alliance for Genomics and Health

(2015) M. Lawler et al.   Cancer Discovery

An open future for ecological and evolutionary data?

(2014) Amye Kenall et al.   BMC EVOLUTIONARY BIOLOGY

High-Performance Integrated Virtual Environment (HIVE) Tools and Applications for Big Data Analysis

(2014) Vahan Simonyan et al.   Genes

Structuring research methods and data with the research object model: genomics workflows as a case study

(2014) Kristina M Hettne et al.   Journal of Biomedical Semantics

Reproducibility of research and preclinical validation: problems and solutions

(2013) Lajos Pusztai et al.   Nature Reviews Clinical Oncology

ClinVar: public archive of relationships among sequence variation and human phenotype

(2013) Melissa J. Landrum et al.   NUCLEIC ACIDS RESEARCH

PAV ontology: provenance, authoring and versioning

(2013) Paolo Ciccarese et al.   Journal of Biomedical Semantics

Diagnostic Applications of High-Throughput DNA Sequencing

(2012) Scott D. Boyd   Annual Review of Pathology-Mechanisms of Disease

Why linked data is not enough for scientists

(2011) Sean Bechhofer et al.   Future Generation Computer Systems-The International Journal of eScience

Cancer trial errors revealed

(2011) Eugenie Samuel Reich   NATURE

Challenges and Opportunities of Open Data in Ecology

(2011) O. J. Reichman et al.   SCIENCE

The Open Provenance Model core specification (v1.1)

(2010) Luc Moreau et al.   Future Generation Computer Systems-The International Journal of eScience

myExperiment: a repository and social network for the sharing of bioinformatics workflows

(2010) Carole A. Goble et al.   NUCLEIC ACIDS RESEARCH

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Data sharing in genomics — re-shaping scientific practice

(2009) Jane Kaye et al.   NATURE REVIEWS GENETICS

The FDA Critical Path Initiative and Its Influence on New Drug Development

(2008) Janet Woodcock et al.   Annual Review of Medicine

A HapMap harvest of insights into the genetics of common disease

(2008) Teri A. Manolio et al.   JOURNAL OF CLINICAL INVESTIGATION