Local adaptation in mainland anole lizards: Integrating population history and genome-environment associations

The search for loci under selection: trends, biases and progress

(2018) Collin W. Ahrens et al.   MOLECULAR ECOLOGY

Phylogeography and historical demography of the arboreal pit viper Bothrops bilineatus (Serpentes, Crotalinae) reveal multiple connections between Amazonian and Atlantic rain forests

(2018) Francisco Dal Vechio et al.   JOURNAL OF BIOGEOGRAPHY

The historical connections between the Amazon and the Atlantic Forest revisited

(2017) Roger Maia Dias Ledo et al.   JOURNAL OF BIOGEOGRAPHY

Estimating synchronous demographic changes across populations using hABC and its application for a herpetological community from northeastern Brazil

(2017) Marcelo Gehara et al.   MOLECULAR ECOLOGY

Biogeographic links between southern Atlantic Forest and western South America: Rediscovery, re-description, and phylogenetic relationships of two rare montane anole lizards from Brazil

(2017) Ivan Prates et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic and phenotypic signatures of climate adaptation in an Anolis lizard

(2017) Ariel Rodríguez et al.   Ecology and Evolution

Recurrent connections between Amazon and Atlantic forests shaped diversity in Caatinga four-eyed frogs

(2016) Maria Tereza C. Thomé et al.   JOURNAL OF BIOGEOGRAPHY

Climate-mediated adaptation after mainland colonization of an ancestrally subtropical island lizard,Anolis carolinensis

(2016) S. C. Campbell-Staton et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomewide scan for adaptive differentiation along altitudinal gradient in the Andrew's toadBufo andrewsi

(2016) Baocheng Guo et al.   MOLECULAR ECOLOGY

Adaptive genomic divergence under high gene flow between freshwater and brackish-water ecotypes of prickly sculpin (Cottus asper) revealed by Pool-Seq

(2016) Stefan Dennenmoser et al.   MOLECULAR ECOLOGY

A mid-Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards

(2016) Ivan Prates et al.   MOLECULAR ECOLOGY

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus )

(2016) Laura Benestan et al.   MOLECULAR ECOLOGY

Molecular data reveal spatial and temporal patterns of diversification and a cryptic new species of lowland Stenocercus Duméril & Bibron, 1837 (Squamata: Tropiduridae)

(2016) Mauro Teixeira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring responses to climate dynamics from historical demography in neotropical forest lizards

(2016) Ivan Prates et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography of Neotropical Rainforests: past connections between Amazon and Atlantic Forest detected by ecological niche modeling

(2015) Thadeu Sobral-Souza et al.   EVOLUTIONARY ECOLOGY

Detecting adaptive evolution based on association with ecological gradients: Orientation matters!

(2015) E Frichot et al.   HEREDITY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Phylogenetic relationships of Amazonian anole lizards (Dactyloa): Taxonomic implications, new insights about phenotypic evolution and the timing of diversification

(2015) Ivan Prates et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Catalogue of distribution of lizards (Reptilia: Squamata) from the Brazilian Amazonia. I. Dactyloidae, Hoplocercidae, Iguanidae, Leiosauridae, Polychrotidae, Tropiduridae

(2015) MARCO A. RIBEIRO-JÚNIOR   ZOOTAXA

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

High Levels of Diversity Uncovered in a Widespread Nominal Taxon: Continental Phylogeography of the Neotropical Tree Frog Dendropsophus minutus

(2014) Marcelo Gehara et al.   PLoS One

Prediction of phylogeographic endemism in an environmentally complex biome

(2014) A. C. Carnaval et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Revisiting the vanishing refuge model of diversification

(2014) Roberta Damasceno et al.   Frontiers in Genetics

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence in coloration and ecological speciation in theAnolis marmoratusspecies complex

(2013) Martha M. Muñoz et al.   MOLECULAR ECOLOGY

Reciprocal regulation of p53 and malic enzymes modulates metabolism and senescence

(2013) Peng Jiang et al.   NATURE

Dehydration Hardly Slows Hopping Toads (Rhinella granulosa) from Xeric and Mesic Environments

(2013) Ivan Prates et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Climate change patterns in Amazonia and biodiversity

(2013) Hai Cheng et al.   Nature Communications

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multi-Locus Phylogeographic and Population Genetic Analysis of Anolis carolinensis: Historical Demography of a Genomic Model Species

(2012) Marc Tollis et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Sample size requirements to detect gene-environment interactions in genome-wide association studies

(2011) Cassandra E. Murcray et al.   GENETIC EPIDEMIOLOGY

The genome of the green anole lizard and a comparative analysis with birds and mammals

(2011) Jessica Alföldi et al.   NATURE

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Cutaneous Resistance to Evaporative Water Loss in Brazilian Rhinella (Anura: Bufonidae) from Contrasting Environments

(2009) Ivan Prates et al.   COPEIA