Species-level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
Published 2019 View Full Article
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Title
Species-level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
Authors
Keywords
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Journal
Ecology and Evolution
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2019-01-15
DOI
10.1002/ece3.4843
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- (2012) David A W Soergel et al. ISME Journal
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