Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells
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Title
Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-12-28
DOI
10.1038/s41467-018-08006-y
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- (2008) G. Bourque et al. GENOME RESEARCH
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