Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere

Cryptophyta as major bacterivores in freshwater summer plankton

(2018) Vesna Grujcic et al.   ISME Journal

Anaerobic consortia of fungi and sulfate reducing bacteria in deep granite fractures

(2017) Henrik Drake et al.   Nature Communications

Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters

(2017) Xiaofen Wu et al.   Microbiome

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

(2017) Elias Broman et al.   Microbiome

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2concentrations

(2016) Alexander J. Probst et al.   ENVIRONMENTAL MICROBIOLOGY

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

(2016) Valerie Hubalek et al.   ISME Journal

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An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers

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Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor

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High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes

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Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment

(2016) Louie Wurch et al.   Nature Communications

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

(2016) Alexandre Bagnoud et al.   Nature Communications

Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids

(2016) Alberto Robador et al.   Frontiers in Microbiology

A new view of the tree of life

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Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

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Extreme fractionation and micro-scale variation of sulphur isotopes during bacterial sulphate reduction in deep groundwater systems

(2015) Henrik Drake et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

(2015) Xiaofen Wu et al.   ISME Journal

A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust

(2015) Cara Magnabosco et al.   ISME Journal

Eukaryotic opportunists dominate the deep-subsurface biosphere in South Africa

(2015) G. Borgonie et al.   Nature Communications

Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland

(2015) Elina Sohlberg et al.   Frontiers in Microbiology

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust

(2015) Alberto Robador et al.   Frontiers in Microbiology

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities

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HTSeq--a Python framework to work with high-throughput sequencing data

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Trimmomatic: a flexible trimmer for Illumina sequence data

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Sulphate-controlled Diversity of Subterranean Microbial Communities over Depth in Deep Groundwater with Opposing Gradients of Sulphate and Methane

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Infernal 1.1: 100-fold faster RNA homology searches

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Weighing the deep continental biosphere

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Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling

(2013) Brett J Baker et al.   ISME Journal

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Gene expression in the deep biosphere

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Microbial life under extreme energy limitation

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Geomicrobiological properties of Tertiary sedimentary rocks from the deep terrestrial subsurface

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Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

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Microbial activity in the marine deep biosphere: progress and prospects

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Effect of Tunnel Excavation on Source and Mixing of Groundwater in a Coastal Granitoidic Fracture Network

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Metabolic activity of subterranean microbial communities in deep granitic groundwater supplemented with methane and H2

(2012) Karsten Pedersen   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

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Biogeochemical processes in a clay formation in situ experiment: Part D – Microbial analyses – Synthesis of results

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Measuring unbiased metatranscriptomics in suboxic waters of the central Baltic Sea using a new in situ fixation system

(2011) Janie Feike et al.   ISME Journal

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

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Nematoda from the terrestrial deep subsurface of South Africa

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Under the sea: microbial life in volcanic oceanic crust

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Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

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The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

(2009) Verena B. Heuer et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial methane production in deep aquifer associated with the accretionary prism in Southwest Japan

(2009) Hiroyuki Kimura et al.   ISME Journal

Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater

(2009) Hallgerd S C Eydal et al.   ISME Journal

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Site descriptive modelling during characterization for a geological repository for nuclear waste in Sweden

(2008) A. Ström et al.   APPLIED GEOCHEMISTRY

Understanding groundwater chemistry using mixing models

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Characterization of microbial processes in deep aquifers of the Fennoscandian Shield

(2008) Lotta Hallbeck et al.   APPLIED GEOCHEMISTRY

Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden

(2008) Jennifer E Kyle et al.   ISME Journal