Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.)

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

(2018) Zhiying Ma et al.   NATURE GENETICS

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

(2018) Aniek C. Bouwman et al.   NATURE GENETICS

Genome-wide association study identified genetic variations and candidate genes for plant architecture component traits in Chinese upland cotton

(2018) Junji Su et al.   THEORETICAL AND APPLIED GENETICS

Single-Locus and Multi-Locus Genome-Wide Association Studies in the Genetic Dissection of Fiber Quality Traits in Upland Cotton (Gossypium hirsutum L.)

(2018) Chengqi Li et al.   Frontiers in Plant Science

Genome-Wide Association Study Identifies Candidate Genes Related to Seed Oil Composition and Protein Content in Gossypium hirsutum L.

(2018) Yanchao Yuan et al.   Frontiers in Plant Science

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Genome-wide association study discovered genetic variation and candidate genes of fibre quality traits in Gossypium hirsutum L.

(2017) Zhengwen Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs

(2017) Cong Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

(2016) Md Sariful Islam et al.   BMC GENOMICS

Influences of the combination of high temperature and water deficit on the heritabilities and correlations of agronomic and fiber quality traits in upland cotton

(2016) Timothy A. Dabbert et al.   EUPHYTICA

ccNET: Database of co-expression networks with functional modules for diploid and polyploidGossypium

(2016) Qi You et al.   NUCLEIC ACIDS RESEARCH

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)

(2016) Jacqueline MacArthur et al.   NUCLEIC ACIDS RESEARCH

Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison between Gossypium hirsutum and G. hirsutum × G. barbadense populations

(2015) Joseph I Said et al.   MOLECULAR GENETICS AND GENOMICS

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

MAGIC populations in crops: current status and future prospects

(2015) B. Emma Huang et al.   THEORETICAL AND APPLIED GENETICS

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

(2015) A. M. Hulse-Kemp et al.   G3-Genes Genomes Genetics

Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.)

(2014) David D Fang et al.   BMC GENOMICS

Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength

(2014) Md. S. Islam et al.   MOLECULAR BREEDING

Next generation genetic mapping of the Ligon-lintless-2 (Li 2) locus in upland cotton (Gossypium hirsutum L.)

(2014) Gregory N. Thyssen et al.   THEORETICAL AND APPLIED GENETICS

Linkage Map Construction and Quantitative Trait Locus Analysis of Agronomic and Fiber Quality Traits in Cotton

(2014) Michael A. Gore et al.   Plant Genome

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries

(2013) David D. Fang et al.   EUPHYTICA

Evaluation of cotton fiber maturity measurements

(2013) Dev R. Paudel et al.   INDUSTRIAL CROPS AND PRODUCTS

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

(2013) Danielle Welter et al.   NUCLEIC ACIDS RESEARCH

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Multiparent intercross populations in analysis of quantitative traits

(2012) SUJAY RAKSHIT et al.   JOURNAL OF GENETICS

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population

(2011) X. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid measurement of cotton fiber maturity and fineness by image analysis microscopy using the Cottonscope®

(2011) James Rodgers et al.   TEXTILE RESEARCH JOURNAL

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

Genetic Design and Statistical Power of Nested Association Mapping in Maize

(2008) Jianming Yu et al.   GENETICS

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

(2008) Mark I. McCarthy et al.   NATURE REVIEWS GENETICS