Thermal stability of single-domain antibodies estimated by molecular dynamics simulations
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Thermal stability of single-domain antibodies estimated by molecular dynamics simulations
Authors
Keywords
-
Journal
PROTEIN SCIENCE
Volume 28, Issue 2, Pages 429-438
Publisher
Wiley
Online
2018-11-05
DOI
10.1002/pro.3546
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism
- (2018) Masayuki Oda et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Toward rational antibody design: recent advancements in molecular dynamics simulations
- (2018) Takefumi Yamashita INTERNATIONAL IMMUNOLOGY
- Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle
- (2018) Nobutaka Numoto et al. BIOCHEMISTRY
- Accurate Prediction of Complex Structure and Affinity for a Flexible Protein Receptor and Its Inhibitor
- (2017) Gert-Jan Bekker et al. Journal of Chemical Theory and Computation
- Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion
- (2017) Marina Katava et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)
- (2017) Akira R. Kinjo et al. PROTEIN SCIENCE
- Unveiling a Drift Resistant Cryptotope within Marburgvirus Nucleoprotein Recognized by Llama Single-Domain Antibodies
- (2017) John Anthony Garza et al. Frontiers in Immunology
- Model Building of Antibody–Antigen Complex Structures Using GBSA Scores
- (2016) Noriko Shimba et al. Journal of Chemical Information and Modeling
- A critical appraisal of the zero-multipole method: Structural, thermodynamic, dielectric, and dynamical properties of a water system
- (2016) Han Wang et al. JOURNAL OF CHEMICAL PHYSICS
- Stability of isolated antibody-antigen complexes as a predictive tool for selecting toxin neutralizing antibodies
- (2016) Patricia M. Legler et al. mAbs
- Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures
- (2016) Akira R. Kinjo et al. NUCLEIC ACIDS RESEARCH
- Elastic properties of dynein motor domain obtained from all-atom molecular dynamics simulations
- (2016) Narutoshi Kamiya et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Revisiting antibody modeling assessment for CDR-H3 loop
- (2016) Hiroshi Nishigami et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Molmil: a molecular viewer for the PDB and beyond
- (2016) Gert-Jan Bekker et al. Journal of Cheminformatics
- Can template-based protein models guide the design of sequence fitness for enhanced thermal stability of single domain antibodies?
- (2015) Mark A. Olson et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Kotai Antibody Builder: automated high-resolution structural modeling of antibodies
- (2014) K. Yamashita et al. BIOINFORMATICS
- PyIgClassify: a database of antibody CDR structural classifications
- (2014) Jared Adolf-Bryfogle et al. NUCLEIC ACIDS RESEARCH
- Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization
- (2014) Brian D. Weitzner et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Structural and mutational analysis of a monomeric and dimeric form of a single domain antibody with implications for protein misfolding
- (2014) Jade George et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Application of zero-dipole summation method to molecular dynamics simulations of a membrane protein system
- (2013) Narutoshi Kamiya et al. CHEMICAL PHYSICS LETTERS
- Molecular Dynamics Simulations Accelerated by GPU for Biological Macromolecules with a Non-Ewald Scheme for Electrostatic Interactions
- (2013) Tadaaki Mashimo et al. Journal of Chemical Theory and Computation
- Molecular Dynamics Simulations of Double-Stranded DNA in an Explicit Solvent Model with the Zero-Dipole Summation Method
- (2013) Takamasa Arakawa et al. PLoS One
- Native contacts determine protein folding mechanisms in atomistic simulations
- (2013) R. B. Best et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simple and accurate scheme to compute electrostatic interaction: Zero-dipole summation technique for molecular system and application to bulk water
- (2012) Ikuo Fukuda et al. JOURNAL OF CHEMICAL PHYSICS
- Single domain antibodies: promising experimental and therapeutic tools in infection and immunity
- (2009) Janusz Wesolowski et al. MEDICAL MICROBIOLOGY AND IMMUNOLOGY
- Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations
- (2008) In Suk Joung et al. JOURNAL OF PHYSICAL CHEMISTRY B
- P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
- (2007) Berk Hess Journal of Chemical Theory and Computation
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search