Review
Agriculture, Dairy & Animal Science
Pascal Duenk, Piter Bijma, Yvonne C. J. Wientjes, Mario P. L. Calus
Summary: This study compared different genomic prediction strategies for improving crossbred performance, finding that accuracy and response to selection are influenced by various factors; accurate estimates of r(pc) are recommended for breeding goal traits, and collecting data in a CB environment should be considered.
JOURNAL OF ANIMAL SCIENCE
(2021)
Article
Agriculture, Dairy & Animal Science
Jon H. Eiriksson, Ismo Stranden, Guosheng Su, Esa A. Mantysaari, Ole F. Christensen
Summary: In genomic prediction of crossbred animals, accounting for the breed origin of alleles (BOA) can improve the accuracy of genomic breeding value prediction. This study investigated different measures of breed proportions and heterozygosity derived from BOA, and validated their effectiveness for predicting production traits in crossbred dairy cows. The results showed that models incorporating BOA had higher predictive ability compared to models using only global breed proportions.
JOURNAL OF DAIRY SCIENCE
(2022)
Article
Genetics & Heredity
Houssemeddine Srihi, Jose Luis Noguera, Victoria Topayan, Melani Martin de Hijas, Noelia Ibanez-Escriche, Joaquim Casellas, Marta Vazquez-Gomez, Maria Martinez-Castillero, Juan Pablo Rosas, Luis Varona
Summary: This study analyzed the hybrid pig breed CASTUA by estimating the additive and dominance variances, as well as the genetic correlations between purebred and crossbred populations. It identified four genomic regions associated with additive genetic variance in chromosomes 6, 8, and 12.
Article
Agriculture, Dairy & Animal Science
Jon H. Eiriksson, Kevin Byskov, Guosheng Su, Jorn Rind Thomasen, Ole F. Christensen
Summary: This study aimed to investigate if reliable genomic predictions for crossbred dairy cows can be obtained by combining estimated marker effects from the genomic evaluations of purebreds. The results showed that predictive ability was higher when accounting for breed origin compared to only considering genomic breed proportions, and the breed proportion model had level bias.
JOURNAL OF DAIRY SCIENCE
(2022)
Article
Agriculture, Dairy & Animal Science
Wayne S. Pitchford, Judith M. Pitchford, Jena G. Alexopoulos, Michelle L. Hebart
Summary: This study presents a genomic analysis of purebred Angus and Hereford x Angus maternal productivity, highlighting the importance of heterozygosity effects and breed differences on growth, puberty, and reproductive performance. The research suggests that genomics offers a cost-effective and efficient strategy for the development of multi-breed Estimated Breeding Values in commercial herds.
Article
Plant Sciences
Charlotte Brault, Vincent Segura, Patrice This, Loic Le Cunff, Timothee Flutre, Pierre Francois, Thierry Pons, Jean-Pierre Peros, Agnes Doligez
Summary: This study evaluated the potential application of genomic prediction in grapevine breeding. The results showed promising predictive ability values for implementing genomic selection in some traits and/or crosses. Additionally, the study provided key insights into the variables affecting predictive ability.
HORTICULTURE RESEARCH
(2022)
Article
Agriculture, Dairy & Animal Science
El Hamidi Hay, Andy Roberts
Summary: This study evaluated the effects of heterozygosity on growth traits in an Angus x Hereford cross-population and identified genomic regions associated with heterosis. The effects of crossbreeding were an increase of 0.03 kg, 5.13 kg, and 6.02 kg in birth weight, weaning weight, and yearling weight, respectively. Significant genomic regions related to heterosis were located on chromosomes 1, 2, 6, 21, 14, 19, 13, and 12. The findings could be valuable in optimizing crossbreeding.
Article
Agriculture, Dairy & Animal Science
R. Mrode, J. Ojango, C. Ekine-Dzivenu, H. Aliloo, J. Gibson, M. A. Okeyo
Summary: Selection based on genomic predictions is feasible for genetic improvement in smallholder dairy systems in Tanzania, with moderate to high levels of accuracy (0.53-0.83) obtained for genomic prediction of daily milk yield and body weight. This approach is likely to be the only initial possible pathway to implementing sustained genetic improvement programs in such systems.
JOURNAL OF DAIRY SCIENCE
(2021)
Article
Agriculture, Dairy & Animal Science
Siyi Liu, Tianxiong Yao, Dong Chen, Shijun Xiao, Liqing Chen, Zhiyan Zhang
Summary: This study explores the potential application of genomic selection of purebred (PB) animals using genotypes of commercial crossbred (CB) animals with extreme phenotypes as the reference population. The results show that using CB animals with extreme phenotypes as the reference population, in combination with the Bayesian sparse linear mixed model (BSLMM) prediction model, significantly improves selection response for CB performance. For high-heritability traits, the predictive performance of a reference population of extreme CB phenotypes is comparable to that of PB phenotypes and can even exceed it if the reference population size is large enough. The use of extreme CB phenotypes outperforms the use of PB phenotypes for selecting first and terminal sires in a three-way crossbreeding system.
GENETICS SELECTION EVOLUTION
(2023)
Article
Agriculture, Dairy & Animal Science
J. B. Clasen, M. Kargo, S. Ostergaard, W. F. Fikse, L. Rydhmer, E. Strandberg
Summary: The study found that combining sexed semen, genomic testing, and crossbreeding in dairy cattle breeding can lead to the highest economic returns. Terminal crossbreeding may result in lower genetic returns compared to pure-breeding scenarios, but this can be compensated by higher operational returns.
JOURNAL OF DAIRY SCIENCE
(2021)
Article
Agriculture, Dairy & Animal Science
G. M. Pereira, L. B. Hansen, B. J. Heins
Summary: This study compared calves of different breeds in terms of gestation length, calf weight at birth, calving difficulty, and stillbirth. The results showed that there were differences among the different breeds in these indicators, but certain breeds could increase gestation length and calf weight without increasing calving difficulty and stillbirth.
JOURNAL OF DAIRY SCIENCE
(2022)
Article
Agriculture, Dairy & Animal Science
W. S. Pitchford, J. M. Pitchford, R. A. McEwin, R. Tearle
Summary: The study compared production differences of Hereford Angus crossbreds with purebred Angus, finding superior performance in certain aspects for the crossbred animals. Significant heterosis effects were also confirmed for traits such as birthweight and muscle area.
ANIMAL PRODUCTION SCIENCE
(2021)
Article
Plant Sciences
Matias F. Schrauf, Gustavo de los Campos, Sebastian Munilla
Summary: In the process of genomic selection, making decisions through cross validation is important, including comparing candidate models in pairs, defining the relevance of performance differences, and introducing new statistical tests. Most hyper-parameters can be learned from data by minimizing REML or using weakly-informative priors to achieve good predictive results. Paired k-fold cross-validation is a generally applicable and statistically powerful methodology to assess differences in model accuracies.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Forestry
Geoffrey Haristoy, Laurent Bouffier, Luis Fontes, Luis Leal, Jorge A. P. Paiva, Joao-Pedro Pina, Jean-Marc Gion
Summary: Genomic selection is a promising method for accelerating forest tree breeding, but there is limited research on multi-generational breeding programs in forest tree species. In this study, a subset of the Eucalyptus globulus breeding population was analyzed, and pedigree errors were corrected using marker-based relationship coefficients. Pseudo-phenotypes derived from field trials were used to estimate breeding values, and accuracy of genomic prediction models was evaluated through cross-validation. The study showed promising results for the Eucalyptus breeding program of Altri Florestal.
TREE GENETICS & GENOMES
(2023)
Article
Agronomy
Hugues de Verdal, Cedric Baertschi, Julien Frouin, Constanza Quintero, Yolima Ospina, Maria Fernanda Alvarez, Tuong-Vi Cao, Jerome Bartholome, Cecile Grenier
Summary: Genomic selection is a reliable breeding method that can enhance genetic gain in recurrent selection breeding schemes. Integration of multi-generation and multi-location information improves genomic prediction models in the context of shuttle breeding. The Cirad-CIAT upland rice breeding program applies recurrent genomic selection to increase genetic gain and reduce phenotyping efforts.
Article
Agriculture, Dairy & Animal Science
S. Ye, X. Yuan, S. Huang, H. Zhang, Z. Chen, J. Li, X. Zhang, Z. Zhang
Article
Agriculture, Dairy & Animal Science
X. Li, Z. Zhang, X. Liu, Y. Chen
Article
Agriculture, Dairy & Animal Science
Jiaying Wang, Xiaolong Yuan, Shaopan Ye, Shuwen Huang, Yingting He, Hao Zhang, Jiaqi Li, Xiquan Zhang, Zhe Zhang
ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES
(2019)
Article
Multidisciplinary Sciences
Xiaolong Yuan, Zhonghui Li, Shaopan Ye, Zitao Chen, Shuwen Huang, Yuyi Zhong, Hao Zhang, Jiaqi Li, Zhe Zhang
Article
Genetics & Heredity
Xiaolong Yuan, Xiaofeng Zhou, Zitao Chen, Yingting He, Yaru Kong, Shaopan Ye, Ning Gao, Zhe Zhang, Hao Zhang, Jiaqi Li
FRONTIERS IN GENETICS
(2019)
Article
Agriculture, Dairy & Animal Science
Xiaoping Xin, Zhonghui Li, Yuyi Zhong, Qingqing Li, Jiaying Wang, Hao Zhang, Xiaolong Yuan, Jiaqi Li, Zhe Zhang
Article
Agriculture, Dairy & Animal Science
Xiaofeng Zhou, Yingting He, Yao Jiang, Bo He, Xi Deng, Zhe Zhang, Xiaolong Yuan, Jiaqi Li
ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES
(2020)
Article
Agriculture, Dairy & Animal Science
Zhe Zhang, Zitao Chen, Shaopan Ye, Yingting He, Shuwen Huang, Xiaolong Yuan, Zanmou Chen, Hao Zhang, Jiaqi Li
Article
Genetics & Heredity
Zitao Chen, Xiangchun Pan, Yaru Kong, Yao Jiang, Yuyi Zhong, Hao Zhang, Zhe Zhang, Xiaolong Yuan, Jiaqi Li
FRONTIERS IN GENETICS
(2020)
Article
Genetics & Heredity
Yuyi Zhong, Liying Li, Yingting He, Bo He, Zhonghui Li, Zhe Zhang, Hao Zhang, Xiaolong Yuan, Jiaqi Li
Article
Genetics & Heredity
Shaopan Ye, Zi-Tao Chen, Rongrong Zheng, Shuqi Diao, Jinyan Teng, Xiaolong Yuan, Hao Zhang, Zanmou Chen, Xiquan Zhang, Jiaqi Li, Zhe Zhang
FRONTIERS IN GENETICS
(2020)
Article
Agriculture, Dairy & Animal Science
Duanyang Ren, Jinyan Teng, Shuqi Diao, Qing Lin, Jiaqi Li, Zhe Zhang
Summary: This study constructed different SNP panels based on high-density SNP data and explored the relationship between marker density measurements and GEBV accuracy. The results showed that the smaller the variation degree of physical distance between adjacent SNPs, the higher the GEBV accuracy.
Article
Genetics & Heredity
Qing Lin, Jinyan Teng, Xiaodian Cai, Jiaqi Li, Zhe Zhang
Summary: The genomic prediction models leveraging diverse information from multiple environment phenotypes showed better prediction accuracy, and different prediction strategies could be utilized based on the availability of different environment phenotypes.
Article
Genetics & Heredity
Xiaodian Cai, Jinyan Teng, Duanyang Ren, Hao Zhang, Jiaqi Li, Zhe Zhang
Summary: Heritability enrichment analysis is an important method for exploring the genetic architecture of complex traits in human genetics. This study examined the performance of different heritability enrichment models and their sensitivity to alpha value assumption and LD weight consideration. The results showed that different models provided varying accuracy and stability in the estimation of heritability enrichment. The study contributes to the understanding of the genetic architecture of complex traits and provides a reference for genetic analysis in livestock populations.
Article
Agriculture, Dairy & Animal Science
Xiangchun Pan, Jiali Cai, Yifei Wang, Dantong Xu, Yao Jiang, Wentao Gong, Yuhan Tian, Qingpeng Shen, Zhe Zhang, Xiaolong Yuan, Jiaqi Li
Summary: This study provides a comprehensive analysis of gene expression in pigs and reveals the presence of housekeeping genes, tissue-specific genes, and co-expressed genes. The results offer a fresh perspective on the transcriptional regulation of pig tissues.
Article
Agriculture, Dairy & Animal Science
Jesper Tessin, Judith Rohde, Arne Jung, Nicole Kemper, Jochen Schulz
Summary: In this study, samples from poultry house environment and culled birds were collected, and E. cecorum was successfully isolated. The principle of isolating the pathogen by streaking on a chromogenic agar may motivate researchers to investigate transmission routes and optimize biosecurity measures.
Article
Agriculture, Dairy & Animal Science
Junqin Zhang, Zimin Xie, Yanlin Pan, Zuoxin Chen, Yunzhen Huang, Linlin Li, Jiawen Dong, Yong Xiang, Qi Zhai, Minhua Sun, Xingying Li, Shujian Huang, Ming Liao
Summary: In recent years, there has been an increase in the occurrence of fowl adenovirus 2 (FAdV-2) in China, posing a significant threat to the poultry industry. This study investigated the epidemiology, phylogenetic relationship, genomic characteristics, and pathogenicity of FAdV-2. The results showed that FAdV-2 was the most commonly detected serotype among various FAdV serotypes. Genetic analysis revealed that these FAdV-2 strains formed a distinct branch within the FAdV-D group and had a high nucleotide similarity with reference strains. Recombination analysis identified recombination events between FAdV-2 and FAdV-11 in some strains. Pathogenicity experiments demonstrated that a recombinant FAdV-2 strain caused a high mortality rate and more severe disease in chickens. These findings contribute to our understanding of FAdV-2 and provide a basis for vaccine development.
Article
Agriculture, Dairy & Animal Science
Ebtsam Iraqi, Ali Abdel Hady, Nadia Elsayed, Hanaa Khalil, Amina El-Saadany, Karim El-Sabrout
Summary: Thermal manipulation during egg incubation, particularly at 12 to 18 days, has positive effects on embryonic development, hatching characteristics, chick quality, as well as posthatch thermotolerance and performance.
Article
Agriculture, Dairy & Animal Science
Yong Liu, Mingxin Song, He Bai, Chunhua Wang, Fei Wang, Qi Yuan
Summary: Dietary curcumin supplementation can significantly improve egg quality of quails in the late laying period, primarily by improving lipid metabolism and selectively regulating the intestinal microbial community.
Article
Agriculture, Dairy & Animal Science
Lei Zhang, Zhixuan Song, Peiyao Li, Xingju Song, Xinming Tang, Dandan Hu
Summary: This study evaluated the vaccine potential of recombinant proteins for avian coccidiosis caused by Eimeria. The results showed that the rEten5-B protein can trigger immune protection against E. tenella and may be a potential and effective subunit vaccine for the control of coccidiosis in poultry.
Article
Agriculture, Dairy & Animal Science
Milan Kumar Sharma, Amit Kumar Singh, Doyun Goo, Venkata Sesha Reddy Choppa, Hanseo Ko, Hanyi Shi, Woo Kyun Kim
Summary: The study investigates the effect of Eimeria infection on gastrointestinal physiology, growth performance, and egg production of Hy-Line W-36 laying hens during peak production. Results show that Eimeria infection negatively affects body weight, feed intake, immune response, and nutrient transporter gene expression. Egg production temporarily ceases in hens infected with high and medium-high dosages of Eimeria.
Article
Agriculture, Dairy & Animal Science
Elwy A. Ashour, Mahmoud Kamal, Hayman A. A. Altaie, Ayman A. Swelum, Gamaleldin M. Suliman, Guillermo Tellez-Isaias, Mohamed E. Abd El-Hack
Summary: This study evaluated the effects of CP and ME on the performance and nutritional value of Japanese quail lay chicken. The results showed that protein and energy levels significantly influenced all productive outcomes except feed conversion ratio. The combination of dietary energy and protein levels had a substantial effect on all egg quality trials evaluated. It is recommended to feed layer Japanese quail between the ages of 8 and 20 weeks during the summer with a dietary energy content of 2,900 kcal ME/kg and 20% CP.
Article
Agriculture, Dairy & Animal Science
J. E. Doornweerd, R. F. Veerkamp, B. de Klerk, M. van der Sluis, A. C. Bouwman, E. D. Ellen, G. Kootstra
Summary: Tracking group-housed individual broilers using video can provide valuable information on their health, welfare, and performance. This study conducted a comprehensive analysis on broiler tracking on video and potential tracking errors, highlighting the potential and challenges of phenotyping broiler locomotion. The results emphasized the importance of addressing tracking errors, potential algorithm improvements, and the need for an external animal identification system for efficient locomotion phenotyping.
Article
Agriculture, Dairy & Animal Science
Jiayu Wu, Yanan Wang, Yu An, Changyu Tian, Lingfeng Wang, Zuhong Liu, Desheng Qi
Summary: This study compared the gene expression differences in liver tissues of laying hens at different ages using RNA sequencing, and found that the transport and metabolism of amino acids changed during the growing period, which influenced the growth and development of the hens.
Article
Agriculture, Dairy & Animal Science
J. Raabe, G. Raveendran, W. Otten, K. Homeyer, T. Bartels
Summary: This study investigated the effects of different flicker frequencies on the behavior, performance, and stress response in male turkeys. The results showed that flicker frequencies of 165 Hz or higher had no detrimental effect on growth performance, injurious pecking, or endocrine stress response in the turkeys.
Article
Agriculture, Dairy & Animal Science
Adamu Mani Isa, Yanyan Sun, Yuanmei Wang, Yunlei Li, Jingwei Yuan, Aixin Ni, Hui Ma, Lei Shi, Hailai Hagos Tesfay, Yunhe Zong, Panlin Wang, Pingzhuang Ge, Jilan Chen
Summary: This study sequenced mRNAs and lncRNAs in the ovary stroma of specific chicken breeds and their reciprocal crossbreds to understand the molecular mechanism of heterosis for egg production. Results showed that genes with nonadditive expression were related to follicle growth and atresia as well as oxidative stress in the crossbred hens.
Article
Agriculture, Dairy & Animal Science
Zhepeng Wang, Qiu Chen, Yiwei Wang, Yulu Wang, Ruifang Liu
Summary: The study investigates the functional variants associated with chicken eggshell color in the SLCO1B3 gene by measuring the eggshell color of Lueyang black-boned chickens and analyzing the genetic data. It identifies 15 variants in SLCO1B3 that are significantly associated with eggshell color. However, the functional analysis shows that one specific variant, 1B3_SNP108, does not have a significant effect on promoter activity. This study highlights the importance of SLCO1B3 and its variants in breeding eggshell color.
Article
Agriculture, Dairy & Animal Science
P. Yin, Q. Tong, B. M. Li, W. C. Zheng, Y. Wang, H. Q. Peng, X. L. Xue, S. Q. Wei
Summary: This study investigated the welfare and health of laying hens in a multitier system. The results showed that the spatial distribution of hens changed with increasing age, and lower-ranking hens preferred to stay in lower tiers to avoid competition but still had access to resources. This improved the welfare and health of the hens near the end of the laying cycle.
Article
Agriculture, Dairy & Animal Science
Wenwen Liang, Siqiong Jie, Yiqin Wang, Xiaowei Wen, Yanling Xiong, Xiaoxi Lin, Zhengrong Lv
Summary: This study examined the effect of risk perceptions on preventive behavior among vendors in the live poultry wholesale market and the live poultry retail market in Guangdong Province using the health belief model and structural equation modeling. The results showed that perceived severity and perceived benefits positively influenced vendors' self-efficacy in the wholesale market, while perceived barriers negatively affected self-efficacy in both the wholesale and retail markets. Moreover, cues to action mediated the relationship between perceived severity, perceived benefits, and self-efficacy, and also mediated the effect of perceived susceptibility among wholesale market vendors.
Article
Agriculture, Dairy & Animal Science
Shreeya Sharma, Raveendra R. Kulkarni, Shayan Sharif, Hosni Hassan, Mohammadali Alizadeh, Scott Pratt, Khaled Abdelaziz
Summary: The study investigates the impact of exposing chick embryos to antigens via in ovo delivery of poultry-specific lactobacilli on the expression of genes associated with early bursal development and maturation. Results indicate that the supplementation of poultry-specific lactobacilli to chick embryos can accelerate the development and immunological maturation of the bursa of Fabricius.