Construction of a highly saturated linkage map in Japanese plum (Prunus salicina L.) using GBS for SNP marker calling

Exploring the potential and limitations of genotyping-by-sequencing for SNP discovery and genotyping in tetraploid potato

(2018) Maxime Bastien et al.   GENOME

Synteny-Based Development of CAPS Markers Linked to the Sweet kernel LOCUS, Controlling Amygdalin Accumulation in Almond (Prunus dulcis (Mill.) D.A.Webb)

(2018) Francesca Ricciardi et al.   Genes

Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design

(2017) Shashi N. Goonetilleke et al.   G3-Genes Genomes Genetics

Genotyping by Sequencing for SNP-Based Linkage Analysis and Identification of QTLs Linked to Fruit Quality Traits in Japanese Plum (Prunus salicina Lindl.)

(2017) Juan A. Salazar et al.   Frontiers in Plant Science

Genotyping by Sequencing (GBS) in Apricots and Genetic Diversity Assessment with GBS-Derived Single-Nucleotide Polymorphisms (SNPs)

(2016) Kahraman Gürcan et al.   BIOCHEMICAL GENETICS

Analysis of anthocyanin biosynthesis genes expression profiles in contrasting cultivars of Japanese plum (Prunus salicina L.) during fruit development

(2016) Máximo González et al.   GENE EXPRESSION PATTERNS

Genome Wide Sampling Sequencing for SNP Genotyping: Methods, Challenges and Future Development

(2016) Zhihua Jiang et al.   International Journal of Biological Sciences

Genetic structure based on EST–SSR: a putative tool for fruit color selection in Japanese plum (Prunus salicina L.) breeding programs

(2016) M. González et al.   MOLECULAR BREEDING

Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (Elaeis guineensis)

(2016) Wirulda Pootakham et al.   MOLECULAR BREEDING

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

(2016) Erica A Di Pierro et al.   Horticulture Research

High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc)

(2015) J. Zhang et al.   DNA RESEARCH

Genetic linkage analysis in the age of whole-genome sequencing

(2015) Jurg Ott et al.   NATURE REVIEWS GENETICS

Discovery of non-climacteric and suppressed climacteric bud sport mutations originating from a climacteric Japanese plum cultivar (Prunus salicina Lindl.)

(2015) Ioannis S. Minas et al.   Frontiers in Plant Science

Construction of High Density Sweet Cherry (Prunus avium L.) Linkage Maps Using Microsatellite Markers and SNPs Detected by Genotyping-by-Sequencing (GBS)

(2015) Verónica Guajardo et al.   PLoS One

Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch]

(2015) Douglas Gary Bielenberg et al.   PLoS One

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Breeding in peach, cherry and plum: from a tissue culture, genetic, transcriptomic and genomic perspective

(2013) Basilio Carrasco et al.   BIOLOGICAL RESEARCH

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Construction and Comparative Analyses of Highly Dense Linkage Maps of Two Sweet Cherry Intra-Specific Progenies of Commercial Cultivars

(2013) Carolina Klagges et al.   PLoS One

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Effect prediction of identified SNPs linked to fruit quality and chilling injury in peach [Prunus persica (L.) Batsch]

(2012) Pedro J. Martínez-García et al.   PLANT MOLECULAR BIOLOGY

Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations

(2012) Hoa T. Truong et al.   PLoS One

The peach genome

(2012) Pere Arús et al.   Tree Genetics & Genomes

The genome of Prunus mume

(2012) Qixiang Zhang et al.   Nature Communications

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Construction of an almond linkage map in an Australian population Nonpareil × Lauranne

(2010) Iraj Tavassolian et al.   BMC GENOMICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Molecular characterization of seven genes encoding ethylene-responsive transcriptional factors during plum fruit development and ripening

(2009) I. El-Sharkawy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA