Polycomb repressive complex 2 attenuates ABA-induced senescence in Arabidopsis

Regulation of Cellular Senescence by Polycomb Chromatin Modifiers through Distinct DNA Damage- and Histone Methylation-Dependent Pathways

(2018) Takahiro Ito et al.   Cell Reports

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

(2017) Jun Xiao et al.   NATURE GENETICS

Co-evolution of Hormone Metabolism and Signaling Networks Expands Plant Adaptive Plasticity

(2016) Jing-Ke Weng et al.   CELL

ABA receptor PYL9 promotes drought resistance and leaf senescence

(2016) Yang Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A transcription factor hierarchy defines an environmental stress response network

(2016) L. Song et al.   SCIENCE

Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements

(2016) Hua Wang et al.   PLoS Genetics

The Polycomb Group Protein Regulatory Network

(2015) Iva Mozgova et al.   Annual Review of Plant Biology

The impact of Polycomb group (PcG) and Trithorax group (TrxG) epigenetic factors in plant plasticity

(2015) Maria de la Paz Sanchez et al.   NEW PHYTOLOGIST

Transcriptional ‘memory’ of a stress: transient chromatin and memory (epigenetic) marks at stress-response genes

(2015) Zoya Avramova   PLANT JOURNAL

Polycomb and Trithorax group protein-mediated control of stress responses in plants

(2014) Julia Anna Kleinmanns et al.   BIOLOGICAL CHEMISTRY

ABA-dependent and ABA-independent signaling in response to osmotic stress in plants

(2014) Takuya Yoshida et al.   CURRENT OPINION IN PLANT BIOLOGY

Salt stress and senescence: identification of cross-talk regulatory components

(2014) Annapurna Devi Allu et al.   JOURNAL OF EXPERIMENTAL BOTANY

H3K27me3 and H3K4me3 Chromatin Environment at Super-Induced Dehydration Stress Memory Genes of Arabidopsis thaliana

(2014) Ning Liu et al.   Molecular Plant

Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes

(2014) Ning Liu et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Silencing by Polycomb-Group Proteins

(2014) U. Grossniklaus et al.   Cold Spring Harbor Perspectives in Biology

Nuclear factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis

(2014) Xingliang Hou et al.   Nature Communications

CAMTA 1 regulates drought responses in Arabidopsis thaliana

(2013) Neha Pandey et al.   BMC GENOMICS

Variations on a theme: Polycomb group proteins in plants

(2013) Maria Derkacheva et al.   JOURNAL OF EXPERIMENTAL BOTANY

Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis

(2013) YongSig Kim et al.   PLANT JOURNAL

A Nuclear Calcium-Sensing Pathway Is Critical for Gene Regulation and Salt Stress Tolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Reprogramming of H3K27me3 Is Critical for Acquisition of Pluripotency from Cultured Arabidopsis Tissues

(2012) Chongsheng He et al.   PLoS Genetics

MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets

(2012) Zhen Shao et al.   GENOME BIOLOGY

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

(2011) E. Breeze et al.   PLANT CELL

Dynamic Regulation of H3K27 Trimethylation during Arabidopsis Differentiation

(2011) Marcel Lafos et al.   PLoS Genetics

Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition

(2011) Daniel Bouyer et al.   PLoS Genetics

Abscisic Acid: Emergence of a Core Signaling Network

(2010) Sean R. Cutler et al.   Annual Review of Plant Biology

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

(2009) Chongzhi Zang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis

(2009) Chang Seob Kwon et al.   PLANT JOURNAL

The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development

(2009) Vivien Exner et al.   PLoS One

Transgenic Arabidopsis Plants Expressing the Type 1 Inositol 5-Phosphatase Exhibit Increased Drought Tolerance and Altered Abscisic Acid Signaling

(2008) I. Y. Perera et al.   PLANT CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY