Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections

(2018) Fredrik Salmén et al.   Nature Protocols

Profiling the transcriptome with RNA SPOTs

(2017) Chee-Huat Linus Eng et al.   NATURE METHODS

Applying the INTACT method to purify endosperm nuclei and to generate parental-specific epigenome profiles

(2017) Jordi Moreno-Romero et al.   Nature Protocols

Plant genetics: Spatial transcriptomics in plants

(2017) Liesbet Lieben   NATURE REVIEWS GENETICS

Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants

(2017) Olga Blokhina et al.   Frontiers in Plant Science

Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing

(2016) Sheel Shah et al.   DEVELOPMENT

In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus

(2016) Sheel Shah et al.   NEURON

A method for detecting single mRNA molecules in Arabidopsis thaliana

(2016) Susan Duncan et al.   Plant Methods

High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization

(2016) Jeffrey R. Moffitt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

(2016) P. L. Stahl et al.   SCIENCE

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability

(2014) Harry M. T. Choi et al.   ACS Nano

A high-resolution gene expression map of the Arabidopsis shoot meristem stem cell niche

(2014) R. K. Yadav et al.   DEVELOPMENT

Single-cell in situ RNA profiling by sequential hybridization

(2014) Eric Lubeck et al.   NATURE METHODS

Highly Multiplexed Subcellular RNA Sequencing in Situ

(2014) J. H. Lee et al.   SCIENCE

The use of fluorescence-activated cell sorting in studying plant development and environmental responses

(2013) Anthony D. Carter et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

In situ sequencing for RNA analysis in preserved tissue and cells

(2013) Rongqin Ke et al.   NATURE METHODS

Quantitative single-cell RNA-seq with unique molecular identifiers

(2013) Saiful Islam et al.   NATURE METHODS

Single-molecule mRNA detection and counting in mammalian tissue

(2013) Anna Lyubimova et al.   Nature Protocols

A Simple Method for Gene Expression and Chromatin Profiling of Individual Cell Types within a Tissue

(2010) Roger B. Deal et al.   DEVELOPMENTAL CELL

Plant Cell Walls

(2010) K. Keegstra   PLANT PHYSIOLOGY

Plant cell walls throughout evolution: towards a molecular understanding of their design principles

(2009) P. Sarkar et al.   JOURNAL OF EXPERIMENTAL BOTANY

(1,3;1,4)-β-D-Glucans in Cell Walls of the Poaceae, Lower Plants, and Fungi: A Tale of Two Linkages

(2009) Rachel A. Burton et al.   Molecular Plant