Genome-wide mapping of nucleotide excision repair with XR-seq

Single-nucleotide resolution dynamic repair maps of UV damage inSaccharomyces cerevisiaegenome

(2018) Wentao Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues

(2018) Yanyan Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

(2018) Onur Oztas et al.   Nature Communications

Mfd translocase is necessary and sufficient for transcription-coupled repair inEscherichia coli

(2017) Ogun Adebali et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular mechanisms and genomic maps of DNA excision repair inEscherichia coliand humans

(2017) Jinchuan Hu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA polymerase II is released from the DNA template during transcription-coupled repair in mammalian cells

(2017) Yi-Ying Chiou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide transcription-coupled repair inEscherichia coliis mediated by the Mfd translocase

(2017) Ogun Adebali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global unleashing of transcription elongation waves in response to genotoxic stress restricts somatic mutation rate

(2017) Matthieu D. Lavigne et al.   Nature Communications

Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture)

(2016) Aziz Sancar   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale

(2016) Xiaoting Shu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Global genome nucleotide excision repair is organized into domains that promote efficient DNA repair in chromatin

(2016) Shirong Yu et al.   GENOME RESEARCH

Nucleotide excision repair is impaired by binding of transcription factors to DNA

(2016) Radhakrishnan Sabarinathan et al.   NATURE

Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes

(2016) Dilmi Perera et al.   NATURE

UV-Induced DNA Damage and Mutagenesis in Chromatin

(2016) Peng Mao et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Nucleotide excision repair by dual incisions in plants

(2016) Fazile Canturk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution

(2016) Peng Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis

(2016) Sheera Adar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution

(2016) Jinchuan Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Mutations Form at CTCF-Cohesin Binding Sites in Melanoma Due to Uneven Nucleotide Excision Repair across the Motif

(2016) Rebecca C. Poulos et al.   Cell Reports

Bacterial antisense RNAs are mainly the product of transcriptional noise

(2016) V. Llorens-Rico et al.   Science Advances

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

(2015) Jinchuan Hu et al.   GENES & DEVELOPMENT

An Integrated Approach for Analysis of the DNA Damage Response in Mammalian Cells

(2015) Jun-Hyuk Choi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

High resolution mapping of modified DNA nucleobases using excision repair enzymes

(2014) D. Suzi Bryan et al.   GENOME RESEARCH

Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli

(2014) Maureen K. Thomason et al.   JOURNAL OF BACTERIOLOGY

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

(2014) Joseph T. Wade et al.   NATURE REVIEWS MICROBIOLOGY

Nucleotide Excision Repair in Human Cells

(2013) Jinchuan Hu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

Mechanism of Release and Fate of Excised Oligonucleotides during Nucleotide Excision Repair

(2012) Michael G. Kemp et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Second Chromophore in Drosophila Photolyase/Cryptochrome Family Photoreceptors

(2011) Christopher P. Selby et al.   BIOCHEMISTRY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Control of skin cancer by the circadian rhythm

(2011) S. Gaddameedhi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel method for the genome-wide high resolution analysis of DNA damage

(2010) Yumin Teng et al.   NUCLEIC ACIDS RESEARCH

Circadian control of XPA and excision repair of cisplatin-DNA damage by cryptochrome and HERC2 ubiquitin ligase

(2010) T.-H. Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circadian oscillation of nucleotide excision repair in mammalian brain

(2009) Tae-Hong Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription-coupled DNA repair: two decades of progress and surprises

(2008) Philip C. Hanawalt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY