Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function

Simultaneous two-photon imaging and two-photon optogenetics of cortical circuits in three dimensions

(2018) Weijian Yang et al.   eLife

Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish

(2018) Xiuye Chen et al.   NEURON

Linking Neurons to Network Function and Behavior by Two-Photon Holographic Optogenetics and Volumetric Imaging

(2017) Marco dal Maschio et al.   NEURON

Neuroscience Needs Behavior: Correcting a Reductionist Bias

(2017) John W. Krakauer et al.   NEURON

The ASA's Statement onp-Values: Context, Process, and Purpose

(2016) Ronald L. Wasserstein et al.   AMERICAN STATISTICIAN

The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning

(2016) Takashi Kawashima et al.   CELL

From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response

(2016) Eva A. Naumann et al.   CELL

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

(2016) Loïc A Royer et al.   NATURE BIOTECHNOLOGY

Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy

(2016) Sean Quirin et al.   OPTICS LETTERS

Sensitive red protein calcium indicators for imaging neural activity

(2016) Hod Dana et al.   eLife

SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function

(2015) Raju Tomer et al.   CELL

Acute off-target effects of neural circuit manipulations

(2015) Timothy M. Otchy et al.   NATURE

TRP channel mediated neuronal activation and ablation in freely behaving zebrafish

(2015) Shijia Chen et al.   NATURE METHODS

Whole-brain activity mapping onto a zebrafish brain atlas

(2015) Owen Randlett et al.   NATURE METHODS

Optogenetics: 10 years of microbial opsins in neuroscience

(2015) Karl Deisseroth   NATURE NEUROSCIENCE

Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms

(2015) Matthew B. Bouchard et al.   Nature Photonics

Closed-Loop and Activity-Guided Optogenetic Control

(2015) Logan Grosenick et al.   NEURON

Whole-central nervous system functional imaging in larval Drosophila

(2015) William C. Lemon et al.   Nature Communications

Norepinephrine is required to promote wakefulness and for hypocretin-induced arousal in zebrafish

(2015) Chanpreet Singh et al.   eLife

An optogenetic gene expression system with rapid activation and deactivation kinetics

(2014) Laura B Motta-Mena et al.   Nature Chemical Biology

Independent optical excitation of distinct neural populations

(2014) Nathan C Klapoetke et al.   NATURE METHODS

Mapping brain activity at scale with cluster computing

(2014) Jeremy Freeman et al.   NATURE METHODS

Light-sheet functional imaging in fictively behaving zebrafish

(2014) Nikita Vladimirov et al.   NATURE METHODS

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo

(2014) Adam M Packer et al.   NATURE METHODS

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields

(2014) John Peter Rickgauer et al.   NATURE NEUROSCIENCE

Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior

(2014) Ruben Portugues et al.   NEURON

Descending Control of Swim Posture by a Midbrain Nucleus in Zebrafish

(2014) Tod R. Thiele et al.   NEURON

Neural Control and Modulation of Swimming Speed in the Larval Zebrafish

(2014) Kristen E. Severi et al.   NEURON

Selective Responses to Tonic Descending Commands by Temporal Summation in a Spinal Motor Pool

(2014) Wei-Chun Wang et al.   NEURON

Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons

(2013) C. Satou et al.   DEVELOPMENT

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Rapid 3D light-sheet microscopy with a tunable lens

(2013) Florian O. Fahrbach et al.   OPTICS EXPRESS

The Brain Activity Map

(2013) A. P. Alivisatos et al.   SCIENCE

Fast functional imaging of multiple brain regions in intact zebrafish larvae using Selective Plane Illumination Microscopy

(2013) Thomas Panier et al.   Frontiers in Neural Circuits

Progressive limb ataxia following inferior olive lesions

(2012) K. M. Horn et al.   JOURNAL OF PHYSIOLOGY-LONDON

Brain-wide neuronal dynamics during motor adaptation in zebrafish

(2012) Misha B. Ahrens et al.   NATURE

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Mapping a sensory-motor network onto a structural and functional ground plan in the hindbrain

(2011) M. Koyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regression-Based Identification of Behavior-Encoding Neurons During Large-Scale Optical Imaging of Neural Activity at Cellular Resolution

(2010) Andrew Miri et al.   JOURNAL OF NEUROPHYSIOLOGY

Global and local fMRI signals driven by neurons defined optogenetically by type and wiring

(2010) Jin Hyung Lee et al.   NATURE

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

Anatomy of zebrafish cerebellum and screen for mutations affecting its development

(2009) Young-Ki Bae et al.   DEVELOPMENTAL BIOLOGY

The optimal template effect in hippocampus studies of diseased populations

(2009) Brian B. Avants et al.   NEUROIMAGE

Transparent Adult Zebrafish as a Tool for In Vivo Transplantation Analysis

(2008) Richard Mark White et al.   Cell Stem Cell

Control of visually guided behavior by distinct populations of spinal projection neurons

(2008) Michael B Orger et al.   NATURE NEUROSCIENCE