Terrestrial species adapted to sea dispersal: Differences in propagule dispersal of two Caribbean mangroves

Climatic suitability, isolation by distance and river resistance explain genetic variation in a Brazilian whiptail lizard

(2017) Eliana Faria Oliveira et al.   HEREDITY

Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering

(2017) Richard G. J. Hodel et al.   Scientific Reports

Comparative phylogeography of black mangroves (Avicennia germinans ) and red mangroves (Rhizophora mangle ) in Florida: Testing the maritime discontinuity in coastal plants

(2016) Richard G. J. Hodel et al.   AMERICAN JOURNAL OF BOTANY

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Contrasting support for alternative models of genomic variation based on microhabitat preference: species-specific effects of climate change in alpine sedges

(2016) Rob Massatti et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

(2016) Anna Papadopoulou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative phylogeography clarifies the complexity and problems of continental distribution that drove A. R. Wallace to favor islands

(2016) Brett R. Riddle   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Genetic differentiation and phylogeography of partially sympatric species complex Rhizophora mucronata Lam. and R. stylosa Griff. using SSR markers

(2015) Alison K S Wee et al.   BMC EVOLUTIONARY BIOLOGY

Recent evolutionary history of Lost World endemics: Population genetics, species delimitation, and phylogeography of sky-island treefrogs

(2015) P.E. Salerno et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Wind pollination and propagule formation in Rhizophora mangle L. (Rhizophoraceae): resource or pollination limitation?

(2014) TARCILA L. NADIA et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accurate Phylogenetic Tree Reconstruction from Quartets: A Heuristic Approach

(2014) Rezwana Reaz et al.   PLoS One

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

Strong genetic structure over the American continents and transoceanic dispersal in the mangrove genus Rhizophora (Rhizophoraceae) revealed by broad-scale nuclear and chloroplast DNA analysis

(2013) Koji Takayama et al.   AMERICAN JOURNAL OF BOTANY

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

(2012) P. Roxanne Steele et al.   AMERICAN JOURNAL OF BOTANY

Pollinator-mediated competition between two co-flowering Neotropical mangrove species, Avicennia germinans (Avicenniaceae) and Laguncularia racemosa (Combretaceae)

(2012) C. L. Landry   ANNALS OF BOTANY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

(2011) Shannon CK Straub et al.   BMC GENOMICS

Long-distance dispersal: a framework for hypothesis testing

(2011) Rosemary G. Gillespie et al.   TRENDS IN ECOLOGY & EVOLUTION

The value of estuarine and coastal ecosystem services

(2010) Edward B. Barbier et al.   ECOLOGICAL MONOGRAPHS

Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis

(2010) Chaolong Wang et al.   Statistical Applications in Genetics and Molecular Biology

Adaptation and diversification on islands

(2009) Jonathan B. Losos et al.   NATURE

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

Organic carbon dynamics in mangrove ecosystems: A review

(2008) Erik Kristensen et al.   AQUATIC BOTANY

Ethnobiology, socio-economics and management of mangrove forests: A review

(2008) Bradley B. Walters et al.   AQUATIC BOTANY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mechanisms of long-distance seed dispersal

(2008) Ran Nathan et al.   TRENDS IN ECOLOGY & EVOLUTION