Spatial Distribution of Endogenous Tissue Protease Activity in Gastric Carcinoma Mapped by MALDI Mass Spectrometry Imaging

Probabilistic Segmentation of Mass Spectrometry (MS) Images Helps Select Important Ions and Characterize Confidence in the Resulting Segments

(2016) Kyle D. Bemis et al.   MOLECULAR & CELLULAR PROTEOMICS

FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry

(2016) Andrew Palmer et al.   NATURE METHODS

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments: Fig. 1.

(2015) Kyle D. Bemis et al.   BIOINFORMATICS

MALDI Imaging mass spectrometry: current frontiers and perspectives in pathology research and practice

(2015) Michaela Aichler et al.   LABORATORY INVESTIGATION

Labeling of active proteases in fresh-frozen tissues by topical application of quenched activity-based probes

(2015) Nimali P Withana et al.   Nature Protocols

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

A public repository for mass spectrometry imaging data

(2014) Andreas Römpp et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Ultrasensitive proteome analysis using paramagnetic bead technology

(2014) C. S. Hughes et al.   Molecular Systems Biology

MALDIquant: a versatile R package for the analysis of mass spectrometry data

(2012) S. Gibb et al.   BIOINFORMATICS

Conductive carbon tape used for support and mounting of both whole animal and fragile heat-treated tissue sections for MALDI MS imaging and quantitation

(2012) Richard J.A. Goodwin et al.   Journal of Proteomics

imzML — A common data format for the flexible exchange and processing of mass spectrometry imaging data

(2012) Thorsten Schramm et al.   Journal of Proteomics

Functional imaging of proteases: recent advances in the design and application of substrate-based and activity-based probes

(2011) Laura E Edgington et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

mMass3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data

(2010) Martin Strohalm et al.   ANALYTICAL CHEMISTRY

Impact of Temperature Dependent Sampling Procedures in Proteomics and Peptidomics – A Characterization of the Liver and Pancreas Post Mortem Degradome

(2010) Birger Scholz et al.   MOLECULAR & CELLULAR PROTEOMICS

From Whole-body Sections Down to Cellular Level, Multiscale Imaging of Phospholipids by MALDI Mass Spectrometry

(2010) Pierre Chaurand et al.   MOLECULAR & CELLULAR PROTEOMICS

Emerging principles in protease-based drug discovery

(2010) Marcin Drag et al.   NATURE REVIEWS DRUG DISCOVERY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY