Variations in Gut Microbiota of Siberian Flying Squirrels Correspond to Seasonal Phenological Changes in Their Hokkaido Subarctic Forest Ecosystem

Seasonal variation in the copepod gut microbiome in the subtropical North Atlantic Ocean

(2017) Katyanne M. Shoemaker et al.   ENVIRONMENTAL MICROBIOLOGY

Links between Natural Variation in the Microbiome and Host Fitness in Wild Mammals

(2017) Taichi A. Suzuki   INTEGRATIVE AND COMPARATIVE BIOLOGY

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

(2017) Samuel A. Smits et al.   SCIENCE

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm

(2017) Elvire Bestion et al.   Nature Ecology & Evolution

Seasonal soil microbial responses are limited to changes in functionality at two Alpine forest sites differing in altitude and vegetation

(2017) José A. Siles et al.   Scientific Reports

Metabolomic data suggest regulation of black howler monkey (Alouatta pigra) diet composition at the molecular level

(2016) Katherine R. Amato et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Altered Microbiota Contributes to Reduced Diet-Induced Obesity upon Cold Exposure

(2016) Marika Ziętak et al.   Cell Metabolism

Effects of environmental temperature on the gut microbial communities of tadpoles

(2016) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Drivers of hibernation in the brown bear

(2016) A. L. Evans et al.   Frontiers in Zoology

New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11

(2016) Lindsey M Solden et al.   ISME Journal

Collapse of Insect Gut Symbiosis under Simulated Climate Change

(2016) Yoshitomo Kikuchi et al.   mBio

Marked variation between winter and spring gut microbiota in free-ranging Tibetan Macaques (Macaca thibetana)

(2016) Binghua Sun et al.   Scientific Reports

Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells

(2016) Gyu-Sung Cho et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Gut Microbiota Orchestrates Energy Homeostasis during Cold

(2015) Claire Chevalier et al.   CELL

Marked seasonal variation in the wild mouse gut microbiota

(2015) Corinne F Maurice et al.   ISME Journal

The bacterial communities associated with fecal types and body weight of rex rabbits

(2015) Bo Zeng et al.   Scientific Reports

Effects of Season and Host Physiological State on the Diversity, Density, and Activity of the Arctic Ground Squirrel Cecal Microbiota

(2014) Timothy J. Stevenson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra)

(2014) Katherine R. Amato et al.   MICROBIAL ECOLOGY

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

(2014) Florent E Angly et al.   Microbiome

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Exploring host-microbiota interactions in animal models and humans

(2013) A. D. Kostic et al.   GENES & DEVELOPMENT

Anaerostipes rhamnosivorans sp. nov., a human intestinal, butyrate-forming bacterium

(2013) T. P. N. Bui et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Dietary Factors: Major Regulators of the Gut's Microbiota

(2012) Alexander R. Moschen et al.   Gut and Liver

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Seasonal changes in camera-based indices from an open canopy black spruce forest in Alaska, and comparison with indices from a closed canopy evergreen coniferous forest in Japan

(2012) Shin Nagai et al.   Polar Science

Preliminary Survey of Habitat Use bySciurus vulgaris orientisin a Natural Forest of Hokkaido Island, Japan

(2011) Isao Izumi et al.   MAMMAL STUDY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes

(2009) V. Eeckhaut et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine

Primary and secondary metabolism of winter wheat under cold hardening and treatment with antioxidants

(2008) N. A. Olenichenko et al.   APPLIED BIOCHEMISTRY AND MICROBIOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE