Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions

Contrasting evolutionary genome dynamics between domesticated and wild yeasts

(2017) Jia-Xing Yue et al.   NATURE GENETICS

Repair of UV-induced DNA lesions in natural Saccharomyces cerevisiae telomeres is moderated by Sir2 and Sir3, and inhibited by yKu–Sir4 interaction

(2017) Laetitia Guintini et al.   NUCLEIC ACIDS RESEARCH

The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae

(2016) Marc R. Gartenberg et al.   GENETICS

Analysis of novel Sir3 binding regions inSaccharomyces cerevisiae

(2016) Risa Mitsumori et al.   JOURNAL OF BIOCHEMISTRY

New Insights into the Regulation of Heterochromatin

(2016) Jiyong Wang et al.   TRENDS IN GENETICS

Heterochromatin assembly by interrupted Sir3 bridges across neighboring nucleosomes

(2016) Reza Behrouzi et al.   eLife

The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae

(2016) Marc R. Gartenberg et al.   GENETICS

The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains

(2015) Aisha Ellahi et al.   GENETICS

High-Resolution Chromatin Dynamics during a Yeast Stress Response

(2015) Assaf Weiner et al.   MOLECULAR CELL

Highly condensed chromatins are formed adjacent to subtelomeric and decondensed silent chromatin in fission yeast

(2015) Atsushi Matsuda et al.   Nature Communications

The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains

(2015) Aisha Ellahi et al.   GENETICS

Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors

(2014) Patrick Kemmeren et al.   CELL

The molecular topography of silenced chromatin in Saccharomyces cerevisiae

(2014) D. M. Thurtle et al.   GENES & DEVELOPMENT

A Role for the Nucleoporin Nup170p in Chromatin Structure and Gene Silencing

(2013) David W. Van de Vosse et al.   CELL

High-resolution mapping of transcription factor binding sites on native chromatin

(2013) Sivakanthan Kasinathan et al.   NATURE METHODS

The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle

(2013) Nadia Arnaudo et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens

(2013) Omar Wagih et al.   NUCLEIC ACIDS RESEARCH

Widespread Misinterpretable ChIP-seq Bias in Yeast

(2013) Daechan Park et al.   PLoS One

Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA

(2013) F. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins

(2013) L. Teytelman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics in Saccharomyces cerevisiae

(2013) M. Grunstein et al.   Cold Spring Harbor Perspectives in Biology

Mechanism for epigenetic variegation of gene expression at yeast telomeric heterochromatin

(2012) T. Kitada et al.   GENES & DEVELOPMENT

Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution

(2011) Ho Sung Rhee et al.   CELL

γH2A is a component of yeast heterochromatin required for telomere elongation

(2011) Tasuku Kitada et al.   CELL CYCLE

Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization

(2011) Marta Radman-Livaja et al.   EMBO JOURNAL

Clustering heterochromatin: Sir3 promotes telomere clustering independently of silencing in yeast

(2011) Myriam Ruault et al.   JOURNAL OF CELL BIOLOGY

Dot1 and Histone H3K79 Methylation in Natural Telomeric and HM Silencing

(2011) Yoh-Hei Takahashi et al.   MOLECULAR CELL

The Specificity and Topology of Chromatin Interaction Pathways in Yeast

(2011) Tineke L. Lenstra et al.   MOLECULAR CELL

The tail-module of yeast Mediator complex is required for telomere heterochromatin maintenance

(2011) Jing Peng et al.   NUCLEIC ACIDS RESEARCH

Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 A Resolution

(2011) K.-J. Armache et al.   SCIENCE

H2A.Z (Htz1) Controls the Cell-Cycle-Dependent Establishment of Transcriptional Silencing at Saccharomyces cerevisiae Telomeres

(2010) K. Martins-Taylor et al.   GENETICS

The Telomere-Binding Protein Tbf1 Demarcates snoRNA Gene Promoters in Saccharomyces cerevisiae

(2010) Milena Preti et al.   MOLECULAR CELL

Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX

(2010) Rachel K Szilard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Complete Set of Nascent Transcription Rates for Yeast Genes

(2010) Vicent Pelechano et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Linking Cell Cycle to Histone Modifications: SBF and H2B Monoubiquitination Machinery and Cell-Cycle Regulation of H3K79 Dimethylation

(2009) Julia M. Schulze et al.   MOLECULAR CELL

Reconstitution of Yeast Silent Chromatin: Multiple Contact Sites and O-AADPR Binding Load SIR Complexes onto Nucleosomes In Vitro

(2009) Fabrizio Martino et al.   MOLECULAR CELL

The establishment of gene silencing at single-cell resolution

(2009) Erin A Osborne et al.   NATURE GENETICS

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

(2009) Jay R Hesselberth et al.   NATURE METHODS

Histone H3 N-terminus regulates higher order structure of yeast heterochromatin

(2009) A. S. Sperling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA