Novel MXD4-NUTM1 fusion transcript identified in primary ovarian undifferentiated small round cell sarcoma

CIC-NUTM1 Fusion: A Case Which Expands the Spectrum of NUT -Rearranged Epithelioid Malignancies

(2018) Inga-Marie Schaefer et al.   GENES CHROMOSOMES & CANCER

Transcriptomic definition of molecular subgroups of small round cell sarcomas

(2018) Sarah Watson et al.   JOURNAL OF PATHOLOGY

Novel therapeutic strategy for cervical cancer harboring FGFR3-TACC3 fusions

(2018) Ryo Tamura et al.   Oncogenesis

The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia

(2017) Yu Liu et al.   NATURE GENETICS

Ectopic protein interactions within BRD4–chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma

(2017) Artyom A. Alekseyenko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A pathology atlas of the human cancer transcriptome

(2017) Mathias Uhlen et al.   SCIENCE

Structural insights into POT1-TPP1 interaction and POT1 C-terminal mutations in human cancer

(2017) Cong Chen et al.   Nature Communications

Primary endometrioid stromal sarcomas of the ovary: a clinicopathological study of 14 cases with a review of the literature

(2017) Weimin Xie et al.   Oncotarget

Mucinous epithelial ovarian carcinoma

(2016) T. J. Perren   ANNALS OF ONCOLOGY

Pot1 OB-fold mutations unleash telomere instability to initiate tumorigenesis

(2016) P Gu et al.   ONCOGENE

Identification of ETV6-RUNX1-like and DUX4-rearranged subtypes in paediatric B-cell precursor acute lymphoblastic leukaemia

(2016) Henrik Lilljebjörn et al.   Nature Communications

Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia

(2016) Zhaohui Gu et al.   Nature Communications

Clinical Response of Carcinomas Harboring the BRD4-NUT Oncoprotein to the Targeted Bromodomain Inhibitor OTX015/MK-8628

(2016) A. Stathis et al.   Cancer Discovery

Genomic Profiling of Adult and Pediatric B-cell Acute Lymphoblastic Leukemia

(2016) Yuan-Fang Liu et al.   EBioMedicine

Whole-Exome Sequencing Studies of Parathyroid Carcinomas Reveal NovelPRUNE2Mutations, Distinctive Mutational Spectra Related to APOBEC-Catalyzed DNA Mutagenesis and Mutational Enrichment in Kinases Associated With Cell Migration and Invasion

(2015) Willie Yu et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias

(2015) Anna K Andersson et al.   NATURE GENETICS

NSD3-NUT-expressing midline carcinoma of the lung: First characterization of primary cancer tissue

(2015) Shioto Suzuki et al.   PATHOLOGY RESEARCH AND PRACTICE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Novel kinase fusion transcripts found in endometrial cancer

(2015) Ryo Tamura et al.   Scientific Reports

PRADA: pipeline for RNA sequencing data analysis

(2014) Wandaliz Torres-García et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The landscape and therapeutic relevance of cancer-associated transcript fusions

(2014) K Yoshihara et al.   ONCOGENE

NSD3-NUT Fusion Oncoprotein in NUT Midline Carcinoma: Implications for a Novel Oncogenic Mechanism

(2014) C. A. French et al.   Cancer Discovery

Round cell sarcomas beyond Ewing: emerging entities

(2013) Cristina Antonescu   HISTOPATHOLOGY

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing

(2013) Garrett M Frampton et al.   NATURE BIOTECHNOLOGY

MYC, a downstream target of BRD-NUT, is necessary and sufficient for the blockade of differentiation in NUT midline carcinoma

(2013) A R Grayson et al.   ONCOGENE

Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs

(2012) Christopher T. Saunders et al.   BIOINFORMATICS

Clinicopathologic Features and Long-term Outcomes of NUT Midline Carcinoma

(2012) D. E. Bauer et al.   CLINICAL CANCER RESEARCH

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

(2011) Valentina Boeva et al.   BIOINFORMATICS

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

(2010) Valentina Boeva et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Bardet-Biedl Syndrome-associated Small GTPase ARL6 (BBS3) Functions at or near the Ciliary Gate and Modulates Wnt Signaling

(2010) Cheryl J. Wiens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ARID1AMutations in Endometriosis-Associated Ovarian Carcinomas

(2010) Kimberly C. Wiegand et al.   NEW ENGLAND JOURNAL OF MEDICINE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Frequent Mutations of Chromatin Remodeling Gene ARID1A in Ovarian Clear Cell Carcinoma

(2010) Siân Jones et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS