Genome-wide analysis of the Hsf gene family in Brassica oleracea and a comparative analysis of the Hsf gene family in B. oleracea, B. rapa and B. napus

Characterization of novel heat-responsive transcription factor (TaHSFA6e) gene involved in regulation of heat shock proteins (HSPs) — A key member of heat stress-tolerance network of wheat

(2018) Ranjeet R. Kumar et al.   JOURNAL OF BIOTECHNOLOGY

Transcriptional Regulatory Network of Plant Heat Stress Response

(2017) Naohiko Ohama et al.   TRENDS IN PLANT SCIENCE

Systematic Analysis of Hsf Family Genes in the Brassica napus Genome Reveals Novel Responses to Heat, Drought and High CO2 Stresses

(2017) Xiaoyi Zhu et al.   Frontiers in Plant Science

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The pangenome of an agronomically important crop plant Brassica oleracea

(2016) Agnieszka A. Golicz et al.   Nature Communications

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

(2015) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum)

(2014) Jun Wang et al.   BMC GENOMICS

Genome-wide identification, classification and expression analysis of the heat shock transcription factor family in Chinese cabbage

(2014) Xiaoming Song et al.   MOLECULAR GENETICS AND GENOMICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Genome Duplication and Gene Loss Affect the Evolution of Heat Shock Transcription Factor Genes in Legumes

(2014) Yongxiang Lin et al.   PLoS One

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(2014) Shengyi Liu et al.   Nature Communications

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

(2014) Isobel AP Parkin et al.   GENOME BIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress

(2013) Ki-Hong Jung et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

cDNA-AFLP analysis reveals heat shock proteins play important roles in mediating cold, heat, and drought tolerance in Ammopiptanthus mongolicus

(2013) Huiming Guo et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The heat shock factor family fromTriticum aestivumin response to heat and other major abiotic stresses and their role in regulation of heat shock protein genes

(2013) Gang-Ping Xue et al.   JOURNAL OF EXPERIMENTAL BOTANY

A new link between stress response and nucleolar function during pollen development inArabidopsismediated by AtREN1 protein

(2013) DAVID REŇÁK et al.   PLANT CELL AND ENVIRONMENT

Cyclic Nucleotide Gated Channels 7 and 8 Are Essential for Male Reproductive Fertility

(2013) Meral Tunc-Ozdemir et al.   PLoS One

Genome-Wide Analysis and Molecular Characterization of Heat Shock Transcription Factor Family in Glycine max

(2012) Eunsook Chung et al.   Journal of Genetics and Genomics

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica

(2012) Romy Schmidt et al.   AoB Plants

The plant heat stress transcription factor (Hsf) family: Structure, function and evolution

(2011) Klaus-Dieter Scharf et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genome-wide identification, classification and analysis of heat shock transcription factor family in maize

(2011) Yong-Xiang Lin et al.   BMC GENOMICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Heat perception and signalling in plants: a tortuous path to thermotolerance

(2010) Younousse Saidi et al.   NEW PHYTOLOGIST

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Developmental and heat stress-regulated expression of HsfA2 and small heat shock proteins in tomato anthers

(2009) Filomena Giorno et al.   JOURNAL OF EXPERIMENTAL BOTANY

Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses

(2009) Dheeraj Mittal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

(2009) S. Kosugi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome duplication and gene-family evolution: The case of three OXPHOS gene families

(2008) Anna De Grassi et al.   GENE