Non-random processes determine the colonization of groundwater sediments by microbial communities in a pristine porous aquifer

Inoculation history affects community composition in experimental freshwater bacterioplankton communities

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Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

(2018) James C. Stegen et al.   Nature Communications

Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers

(2018) Robert E. Danczak et al.   mSystems

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

(2017) Emily B. Graham et al.   ENVIRONMENTAL MICROBIOLOGY

Dispersal timing determines the importance of priority effects in bacterial communities

(2017) Pavel Svoboda et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biofilm community succession: a neutral perspective

(2017) Stephen Woodcock et al.   MICROBIOLOGY-SGM

Towards an integrated understanding of how micro scale processes shape groundwater ecosystem functions

(2017) Susanne I. Schmidt et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Mineral Ecology: Surface Specific Colonization and Geochemical Drivers of Biofilm Accumulation, Composition, and Phylogeny

(2017) Aaron A. Jones et al.   Frontiers in Microbiology

Ecological strategies and metabolic trade-offs of complex environmental biofilms

(2017) Robert Niederdorfer et al.   npj Biofilms and Microbiomes

Dispersal-Based Microbial Community Assembly Decreases Biogeochemical Function

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Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems

(2017) Kathryn Korbel et al.   Scientific Reports

Organic contamination versus mineral properties: competing selective forces shaping bacterial community assembly in aquifer sediments

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Microbial interactions and community assembly at microscales

(2016) Otto X Cordero et al.   CURRENT OPINION IN MICROBIOLOGY

Quantification of aquatic sediment prokaryotes—A multiple-steps optimization testing sands from pristine and contaminated aquifers

(2016) Anne Bayer et al.   LIMNOLOGICA

Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem

(2016) Allison M. Veach et al.   MOLECULAR ECOLOGY

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

(2016) James C. Stegen et al.   Nature Communications

Coupling among Microbial Communities, Biogeochemistry and Mineralogy across Biogeochemical Facies

(2016) James C. Stegen et al.   Scientific Reports

Local and Regional Diversity Reveals Dispersal Limitation and Drift as Drivers for Groundwater Bacterial Communities from a Fractured Granite Formation

(2016) E. D. Beaton et al.   Frontiers in Microbiology

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics

(2016) Robert Niederdorfer et al.   Nature Microbiology

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Aquifer environment selects for microbial species cohorts in sediment and groundwater

(2015) Laura A Hug et al.   ISME Journal

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Groundwater ecosystem services: a review

(2015) Christian Griebler et al.   Freshwater Science

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Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure

(2015) Mark Hanemaaijer et al.   Frontiers in Microbiology

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Current developments in groundwater ecology—from biodiversity to ecosystem function and services

(2014) Christian Griebler et al.   CURRENT OPINION IN BIOTECHNOLOGY

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization

(2014) Mina Bižić-Ionescu et al.   ENVIRONMENTAL MICROBIOLOGY

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional microbial diversity explains groundwater chemistry in a pristine aquifer

(2013) Theodore M Flynn et al.   BMC MICROBIOLOGY

Weighing the deep continental biosphere

(2013) Sean McMahon et al.   FEMS MICROBIOLOGY ECOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

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Spatio-temporal patterns of microbial communities in a hydrologically dynamic pristine aquifer

(2012) Yuxiang Zhou et al.   FEMS MICROBIOLOGY ECOLOGY

The relationship between species replacement, dissimilarity derived from nestedness, and nestedness

(2012) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

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(2012) James C Stegen et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

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(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

Species phylogenetic relatedness, priority effects, and ecosystem functioning

(2011) Jiaqi Tan et al.   ECOLOGY

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP

(2011) Giovanni Pilloni et al.   FEMS MICROBIOLOGY ECOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic relatedness predicts priority effects in nectar yeast communities

(2011) K. G. Peay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

(2010) Tadashi Fukami et al.   ECOLOGY LETTERS

High Resolution Analysis of Contaminated Aquifer Sediments and Groundwater—What Can be Learned in Terms of Natural Attenuation?

(2010) Bettina Anneser et al.   GEOMICROBIOLOGY JOURNAL

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microbial biodiversity in groundwater ecosystems

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