Mapping malaria by combining parasite genomic and epidemiologic data

Drug-Resistance and Population Structure of Plasmodium falciparum Across the Democratic Republic of Congo Using High-Throughput Molecular Inversion Probes

(2018) Ozkan Aydemir et al.   JOURNAL OF INFECTIOUS DISEASES

hmmIBD: software to infer pairwise identity by descent between haploid genotypes

(2018) Stephen F. Schaffner et al.   MALARIA JOURNAL

Partner-Drug Resistance and Population Substructuring of Artemisinin-Resistant Plasmodium falciparum in Cambodia

(2017) Christian M. Parobek et al.   Genome Biology and Evolution

Microhaplotypes provide increased power from short-read DNA sequences for relationship inference

(2017) Diana S. Baetscher et al.   Molecular Ecology Resources

Virus genomes reveal factors that spread and sustained the Ebola epidemic

(2017) Gytis Dudas et al.   NATURE

Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples

(2017) Annie N. Cowell et al.   mBio

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites

(2017) Hsiao-Han Chang et al.   PLoS Computational Biology

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent

(2017) Aimee R. Taylor et al.   PLoS Genetics

Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data

(2016) Amy Wesolowski et al.   JOURNAL OF INFECTIOUS DISEASES

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

(2016) Samuel O. Oyola et al.   MALARIA JOURNAL

Key traveller groups of relevance to spatial malaria transmission: a survey of movement patterns in four sub-Saharan African countries

(2016) John M. Marshall et al.   MALARIA JOURNAL

Distinct genomic architecture of Plasmodium falciparum populations from South Asia

(2016) Shiva Kumar et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

(2016) Hsiao-Han Chang et al.   Genome Medicine

Malaria Elimination Campaigns in the Lake Kariba Region of Zambia: A Spatial Dynamical Model

(2016) Milen Nikolov et al.   PLoS Computational Biology

Identifying Malaria Transmission Foci for Elimination Using Human Mobility Data

(2016) Nick W. Ruktanonchai et al.   PLoS Computational Biology

Estimating the most efficient allocation of interventions to achieve reductions in Plasmodium falciparum malaria burden and transmission in Africa: a modelling study

(2016) Patrick G T Walker et al.   Lancet Global Health

Subtle changes in Plasmodium falciparum infection complexity following enhanced intervention in Malawi

(2015) Tamika J. Sisya et al.   ACTA TROPICA

Malaria Molecular Epidemiology: Lessons from the International Centers of Excellence for Malaria Research Network

(2015) Ananias A. Escalante et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Malaria mapping: understanding the global endemicity of falciparum and vivax malaria

(2015) Ursula Dalrymple et al.   BMC Medicine

The effect of malaria control on Plasmodium falciparum in Africa between 2000 and 2015

(2015) S. Bhatt et al.   NATURE

Modeling malaria genomics reveals transmission decline and rebound in Senegal

(2015) Rachel F. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ape parasite origins of human malaria virulence genes

(2015) Daniel B. Larremore et al.   Nature Communications

Eight challenges in phylodynamic inference

(2015) Simon D.W. Frost et al.   Epidemics

Challenges forPlasmodium vivaxmalaria elimination in the genomics era

(2015) Marcelo U. Ferreira et al.   Pathogens and Global Health

Clonal Outbreak ofPlasmodium falciparumInfection in Eastern Panama

(2014) Nicanor Obaldia et al.   JOURNAL OF INFECTIOUS DISEASES

A global assembly of adult female mosquito mark-release-recapture data to inform the control of mosquito-borne pathogens

(2014) Carlos A Guerra et al.   Parasites & Vectors

Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones

(2014) Amy Wesolowski et al.   Scientific Reports

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

(2014) Philippe Lemey et al.   PLoS Pathogens

A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010

(2013) R. C. Reiner et al.   Journal of the Royal Society Interface

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

(2013) Olivo Miotto et al.   NATURE GENETICS

Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal

(2013) Rachel Daniels et al.   PLoS One

Malaria life cycle intensifies both natural selection and random genetic drift

(2013) H.-H. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Sequencing of Plasmodium falciparum Malaria Parasites from Senegal Reveals the Demographic History of the Population

(2012) Hsiao-Han Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantifying the Impact of Human Mobility on Malaria

(2012) A. Wesolowski et al.   SCIENCE

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

International population movements and regional Plasmodium falciparum malaria elimination strategies

(2010) A. J. Tatem et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence

(2008) Daniel E Neafsey et al.   GENOME BIOLOGY