Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective
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Title
Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective
Authors
Keywords
VTEC, <em class="EmphasisTypeItalic ">Escherichia coli</em>, O157:H7, Whole genome sequencing, Outbreak, wgMLST, SNVPhyl
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-12-04
DOI
10.1186/s12864-018-5243-3
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- (2016) Rebecca L. Lindsey et al. Frontiers in Microbiology
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- (2016) Philip M. Ashton et al. PeerJ
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- Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli
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- (2008) A BERANEK et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
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