Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation

AGORA : Organellar genome annotation from the amino acid and nucleotide references

(2018) Jaehee Jung et al.   BIOINFORMATICS

Large Diversity of Nonstandard Genes and Dynamic Evolution of Chloroplast Genomes in Siphonous Green Algae (Bryopsidales, Chlorophyta)

(2018) Ma Chiela M Cremen et al.   Genome Biology and Evolution

Evolutionary Dynamics of Cryptophyte Plastid Genomes

(2017) Jong Im Kim et al.   Genome Biology and Evolution

Rediscovery of the Ochromonas type species Ochromonas triangulata (Chrysophyceae) from its type locality (Lake Veysove, Donetsk region, Ukraine)

(2017) Robert A. Andersen et al.   PHYCOLOGIA

Divergent copies of the large inverted repeat in the chloroplast genomes of ulvophycean green algae

(2017) Monique Turmel et al.   Scientific Reports

A Robust Method for Finding the Automated Best Matched Genes Based on Grouping Similar Fragments of Large-Scale References for Genome Assembly

(2017) Jaehee Jung et al.   Symmetry-Basel

Foreign Plastid Sequences in Plant Mitochondria are Frequently Acquired Via Mitochondrion-to-Mitochondrion Horizontal Transfer

(2017) C. L. Gandini et al.   Scientific Reports

Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

(2016) JunMo Lee et al.   BMC BIOLOGY

Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms)

(2016) Naoyuki Tajima et al.   CURRENT GENETICS

Multigene phylogeny of Synura (Synurophyceae) and descriptions of four new species based on morphological and DNA evidence

(2016) Bok Yeon Jo et al.   EUROPEAN JOURNAL OF PHYCOLOGY

A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts)

(2016) Romain Derelle et al.   MOLECULAR BIOLOGY AND EVOLUTION

The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite

(2016) Tatiana Yurchenko et al.   Open Biology

Assessing the evolutionary history of the class Synurophyceae (Heterokonta) using molecular, morphometric, and paleobiological approaches

(2015) P. A. Siver et al.   AMERICAN JOURNAL OF BOTANY

Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae

(2015) Monique Turmel et al.   Genome Biology and Evolution

Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus

(2015) Peng-Fei Ma et al.   Scientific Reports

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

(2015) Tereza Ševčíková et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Serial Gene Losses and Foreign DNA Underlie Size and Sequence Variation in the Plastid Genomes of Diatoms

(2014) Elizabeth C. Ruck et al.   Genome Biology and Evolution

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conserved Gene Order and Expanded Inverted Repeats Characterize Plastid Genomes of Thalassiosirales

(2014) Jamal S. M. Sabir et al.   PLoS One

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

(2013) Shannon C.K. Straub et al.   Genome Biology and Evolution

Evolution of Red Algal Plastid Genomes: Ancient Architectures, Introns, Horizontal Gene Transfer, and Taxonomic Utility of Plastid Markers

(2013) Jan Janouškovec et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Supermatrix Data Highlight the Phylogenetic Relationships of Photosynthetic Stramenopiles

(2011) Eun Chan Yang et al.   PROTIST

The Complete Plastid Genomes of the Two ‘Dinotoms’ Durinskia baltica and Kryptoperidinium foliaceum

(2010) Behzad Imanian et al.   PLoS One

A Molecular Genetic Timescale for the Diversification of Autotrophic Stramenopiles (Ochrophyta): Substantive Underestimation of Putative Fossil Ages

(2010) Joseph W. Brown et al.   PLoS One

Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids

(2009) Gildas Le Corguillé et al.   BMC EVOLUTIONARY BIOLOGY

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY

Lateral transfer of introns in the cryptophyte plastid genome

(2008) Hameed Khan et al.   NUCLEIC ACIDS RESEARCH