Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms)

Seasonal variation in abundance and species composition of the Parmales community in the Oyashio region, western North Pacific

(2015) M Ichinomiya et al.   AQUATIC MICROBIAL ECOLOGY

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes

(2014) Shawn R Starkenburg et al.   BMC GENOMICS

Serial Gene Losses and Foreign DNA Underlie Size and Sequence Variation in the Plastid Genomes of Diatoms

(2014) Elizabeth C. Ruck et al.   Genome Biology and Evolution

Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum

(2014) Naoyuki Tajima et al.   JOURNAL OF PLANT RESEARCH

An Inordinate Fondness? The Number, Distributions, and Origins of Diatom Species

(2013) David G. Mann et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae

(2013) David Roy Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Chloroplast-mitochondria cross-talk in diatoms

(2012) J. Prihoda et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ancient Gene Paralogy May Mislead Inference of Plastid Phylogeny

(2012) Huan Qiu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture

(2012) David R. Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation

(2011) Markus Lommer et al.   BMC GENOMICS

Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana

(2011) Marie-Pierre Oudot-Le Secq et al.   GENE

Supermatrix Data Highlight the Phylogenetic Relationships of Photosynthetic Stramenopiles

(2011) Eun Chan Yang et al.   PROTIST

ISOLATION AND CHARACTERIZATION OF PARMALES (HETEROKONTA/HETEROKONTOPHYTA/STRAMENOPILES) FROM THE OYASHIO REGION, WESTERN NORTH PACIFIC1

(2010) Mutsuo Ichinomiya et al.   JOURNAL OF PHYCOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

CyanoClust: comparative genome resources of cyanobacteria and plastids

(2010) N. V. Sasaki et al.   Database-The Journal of Biological Databases and Curation

Gclust: trans-kingdom classification of proteins using automatic individual threshold setting

(2009) Naoki Sato   BIOINFORMATICS

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION