Using registries to integrate bioinformatics tools and services into workbench environments

Dissemination of scientific software with Galaxy ToolShed

(2014) Daniel Blankenberg et al.   GENOME BIOLOGY

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

(2013) J. Ison et al.   BIOINFORMATICS

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

(2013) Katherine Wolstencroft et al.   NUCLEIC ACIDS RESEARCH

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology

(2013) Peter J.A. Cock et al.   PeerJ

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

ELIXIR: a distributed infrastructure for European biological data

(2012) Lindsey C. Crosswell et al.   TRENDS IN BIOTECHNOLOGY

Semantics-based composition of EMBOSS services

(2011) Anna-Lena Lamprecht et al.   Journal of Biomedical Semantics

The EMBRACE web service collection

(2010) S. Pettifer et al.   NUCLEIC ACIDS RESEARCH

BioCatalogue: a universal catalogue of web services for the life sciences

(2010) J. Bhagat et al.   NUCLEIC ACIDS RESEARCH

Mobyle: a new full web bioinformatics framework

(2009) B. Neron et al.   BIOINFORMATICS

Integrating ARC grid middleware with Taverna workflows

(2008) H. N. Krabbenhoft et al.   BIOINFORMATICS

Flexible and Efficient Workflow Deployment of Data-Intensive Applications On Grids With MOTEUR

(2008) Tristan Glatard et al.   INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS