EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

BIO::Phylo-phyloinformatic analysis using perl

(2011) Rutger A Vos et al.   BMC BIOINFORMATICS

Chipster: user-friendly analysis software for microarray and other high-throughput data

(2011) M Aleksi Kallio et al.   BMC GENOMICS

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

(2011) M. Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Editorial

(2011) G. Benson   NUCLEIC ACIDS RESEARCH

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis

(2011) J.-W. Li et al.   NUCLEIC ACIDS RESEARCH

War of Ontology Worlds: Mathematics, Computer Code, or Esperanto?

(2011) Andrey Rzhetsky et al.   PLoS Computational Biology

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

(2011) Mark D Wilkinson et al.   Journal of Biomedical Semantics

BioXSD: the common data-exchange format for everyday bioinformatics web services

(2010) M. Kalas et al.   BIOINFORMATICS

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research

(2010) Jessica D. Tenenbaum et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The EMBRACE web service collection

(2010) S. Pettifer et al.   NUCLEIC ACIDS RESEARCH

myExperiment: a repository and social network for the sharing of bioinformatics workflows

(2010) Carole A. Goble et al.   NUCLEIC ACIDS RESEARCH

The Ontology Lookup Service: bigger and better

(2010) R. Cote et al.   NUCLEIC ACIDS RESEARCH

BioCatalogue: a universal catalogue of web services for the life sciences

(2010) J. Bhagat et al.   NUCLEIC ACIDS RESEARCH

Towards BioDBcore: a community-defined information specification for biological databases

(2010) Pascale Gaudet et al.   NUCLEIC ACIDS RESEARCH

Adding a Little Reality to Building Ontologies for Biology

(2010) Phillip Lord et al.   PLoS One

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

An active registry for bioinformatics web services

(2009) S. Pettifer et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

phyloXML: XML for evolutionary biology and comparative genomics

(2009) Mira V Han et al.   BMC BIOINFORMATICS

BioPortal: ontologies and integrated data resources at the click of a mouse

(2009) N. F. Noy et al.   NUCLEIC ACIDS RESEARCH

Interoperability with Moby 1.0--It's better than sharing your toothbrush!

(2008)   BRIEFINGS IN BIOINFORMATICS

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

(2008) Chris F Taylor et al.   NATURE BIOTECHNOLOGY

A Standard MIGS/MIMS Compliant XML Schema: Toward the Development of the Genomic Contextual Data Markup Language (GCDML)

(2008) Renzo Kottmann et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY